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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattaaaaaaactgttacttagatgagttgaccagtgaagagtagttttttttgattcagtttatttgtttatcagGTCATCAGGAAATATACTAAACAGCTTTTACATGGACTGGAATATTTGCATCGCAATGGAATCATACACAGGGATATAAAG

Basic information

species Zea mays
transcript GRMZM2G064613_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 3'ss of exon 4
-------gtaagtattaaaaaaactgttacttagatgagttgaccagtgaagagtagttttttttgattcagtttatttgtttatcagGTCATCAGGAAATATACTAAACAGCTTTTACATGGACTGGAATATTTGCATCGCAATGGAATCATACACAGGGATATAAAG
        ||| | |||     |   |  ||| | |   |||   | | |  |     |  | |||||| | |  |||| |||||||||||||||||||||| || |||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||
gtaagcactaactgttatgttcatcctgtcttcggtagtttggttaatcacaaaagaatcgtgttgattgaatgcatttatttatcagGTCATCAGGAAATACACGAAACAGATTTTGCATGGCCTGGAGTATTTACATCGCAATGGAATCATACACAGGGACATAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgagttgaccagtgaagagtagttttttttgattcagtttatttgtttatcagGTCATCAGGAAATATACTAAACAGCTTTTACATGGACTGGAATATTTGCATCGCAATGGAATCATACACAGGGATATAAAG
                            ttttgat  putative branch site (score: 4)
                                       tttattt  putative PPT
                        ttttttttgattcagt  TA-rich tract