1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagcctgttgctgggtttgattcagtccaagccttgcaaatgtattactaacaagtatatggttttttagGGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATGATAAGCTCTGCTGCGCTTCTTTGTCCCATTTCTTACCTTGATCACGTCA
species | Zea mays |
transcript | GRMZM2G064594_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTATATACAGTTGCACAGTCCAAAATTTTGTATGTGGGACATTCACAG GGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATGEST: gi|89758579|gb|DY687708.1|DY687708
genomic: ATGTATATACAGTTGCACAGTCCAAAATTTTGTATGTGGGACATTCACAGgtagcctgtt ... ggttttttagGGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATG
EST: ATGTATATACAGTTGCACAGTCCAAAATTTTGTATGTGGGACATTCACAG GGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATG
genomic: ATGTATATACAGTTGCACAGTCCAAAATTTTGTATGTGGGACATTCACAGgtagcctgtt ... ggttttttagGGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATG
tttgattcagtccaagccttgcaaatgtattactaacaagtatatggttttttagGGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATGATAAGCTCTGCTGCGCTTCTTTGTCCCATTTCTTACCTTGATCACGTCA
tactaac putative branch site (score: 0)
tttttt putative PPT
aaatgtattactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcctgttgctgggtttgattcagtccaagccttgcaaatgtattactaacaagtatatggttttttagGGAACTATCATGGGTTTGGCTGCGTTTACAATGCCTGAAACAGTAAAGATGATAAGCTCTGCTGCGCTTCTTTGTCCCATTTCTTACCTTGATCACGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC