1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagcaatttcgattgtacagtgaataattcattgcaagttaataacacacatatgagcaacaaatacttttctgagattcagtggcatctcctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTCCCCTACTTCTGGGATGAGGACTGCTTGCCAGCACCAAAAGATGAACTC
species | Zea mays |
transcript | GRMZM2G064371_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCACGCCCACCGGTCAAGAT ATTTATATATTGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATEST: gi|78180987|gb|DV551360.1|DV551360
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATAC-GATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAAT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCACGCCCACCGGTCAAGAT ATTTATATATGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|8577300|gb|BE129937.1|BE129937
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCACGCCCACCGGTCAAGAT ATTTATATATGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|12047263|gb|BF729402.1|BF729402
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGGGATCATATCACGCCCACCGGTCAAGAT ATTTATATATGATGATTGGAGTATGCCTCATACAEST: gi|6918664|gb|AW400194.1|AW400194
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACA
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|32848146|gb|CD987827.1|CD987827
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|211288157|gb|FL392359.1|FL392359
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGAEST: gi|211430009|gb|FL445195.1|FL445195
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGA
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|211507889|gb|FL229580.1|FL229580
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAEST: gi|211516143|gb|FL164987.1|FL164987
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAA
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGAT ATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|87152705|gb|DY397494.1|DY397494
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCACGCCCACCGGTCAAGAT ATTTATATATGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|74034934|gb|DT535424.1|DT535424
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCATATCACGCCCACCGGTCAAGAT ATTTATATATGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTEST: gi|211439420|gb|FL403340.1|FL403340
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATT
EST: CACGAAGATTTGCAAGTTCTTGTGATCCTATCGCGCCCACCGGTCAAGAT ATTTATATACGATGGATTGGAGTATGCCTCATAC
genomic: CACGAAGATTTGCAAGTTCTTGTGATCATATCGCGCCCACCGGTCAAGATgtgagcatat ... cctgttacagATTTATATACGATG-ATTGGAGTATGCCTCATAC
cacacatatgagcaacaaatacttttctgagattcagtggcatctcctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTCCCCTACTTCTGGGATGAGGACTGCTTGCCAGCACCAAAAGATGAACTC
tctcctgtt CT-rich tract
aaatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcaatttcgattgtacagtgaataattcattgcaagttaataacacacatatgagcaacaaatacttttctgagattcagtggcatctcctgttacagATTTATATACGATGATTGGAGTATGCCTCATACAGCTGCAAAGCTGAAATTCCCCTACTTCTGGGATGAGGACTGCTTGCCAGCACCAAAAGATGAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG