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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgatgtataatctcttgtctagttcattttcccttgggaaaatagaaatcccttgggaaaatgaggttcccaaactagtcctaactgttcagggtttcagatacattgagtctccattagatgatgcttggatttggtgttactgaatattttgtctcttgtcgcatctccagGAACTTCAGAGGAAGGGAGAAAGCGTGTCTCAAGCAAAACAGTCATAGCTACGCTCCTGGTCTGCGTGGTTCTCACCACCACCGCTTTCCTCGTCACCAC

Basic information

species Zea mays
transcript GRMZM2G063897_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50323693|gb|CO518819.1|CO518819
EST:     GGAGCTGTTTCACTTCCTGCAACTGCACGTCGGGTACTG                         GAACTTCAGAGGAAGGGAGAAAGCGTGTCTCAAGCAAAACAGTCATAGCTA
genomic: GGAGCTGTTTCACTTCCTGCAACTGCACGTCGGGTACTGgtacgcgatg ... gcatctccagGAACTTCAGAGGAAGGGAGAAAGCGTGTCTCAAGCAAAACAGTCATAGCTA
EST: gi|78086186|gb|DV514579.1|DV514579
EST:     GCTACGTGACGGGAGCTGTTTCACTTCCTGCAACTGCACGTCGGGTACTG                         GAACTTCAGAGGAAGGGAGAAAGCGTGTCTCAAGCAAAACAGTCATAGCTA
genomic: GCTACGTGACGGGAGCTGTTTCACTTCCTGCAACTGCACGTCGGGTACTGgtacgcgatg ... gcatctccagGAACTTCAGAGGAAGGGAGAAAGCGTGTCTCAAGCAAAACAGTCATAGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgatgcttggatttggtgttactgaatattttgtctcttgtcgcatctccagGAACTTCAGAGGAAGGGAGAAAGCGTGTCTCAAGCAAAACAGTCATAGCTACGCTCCTGGTCTGCGTGGTTCTCACCACCACCGCTTTCCTCGTCACCAC
                                              catctcc  CT-rich tract
                     ttactgaatatttt  TA-rich tract