Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatatctttttttgtgtctgtggctcaaaagtaatgcatatgtgctacatctcatatgcattacatgttgctaatgctgttgatgcaagacccctggctcgtttgctctgccatctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT

Basic information

species Zea mays
transcript GRMZM2G063864_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063864_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 3'ss of exon 4
gtaagtaaatatctttttttgtgtctgtggctcaaaagtaatgcatatgtgctacatctcatatgcattacatgttgctaatgctgttgatgcaagacccctggctcgtttgctctgccatctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAG---GAGGACCAGGCGT
                      || |||     | | || || ||||||    |  ||| | ||||||||  |   ||  ||          ||  ||   |  |   || | |   || ||| || |||||||| || |   ||||||||||||| ||||| || |||||| | || |||||||| ||||| |||||||||| ||| | | |||||   ||||||||||   
----------------------gtatgt-----acatgtgat-catatgc---atgtctaacatgcattatctagcgcccatatca-----acacaacgtttaaccttttcgtttc-ccttcttttccagCCATCGAAGCAATCCAATTCTAACAGCAAGCCTGCAAAGCCACCTCAGCCAAAAGATGAGGAAGACAGCGGCCCGGAAGGCACAGAGGATGAGGACCAGG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33097704|gb|CF057664.1|CF057664
EST:     GAAAGCCCCC-ACGGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: GAAAGCCCCCAAC-GGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|20336905|gb|BQ172535.1|BQ172535
EST:     GGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAT                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: GGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|7162296|gb|AW519903.1|AW519903
EST:     CCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: CCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|5567021|gb|AI881932.1|AI881932
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCC
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCC
EST: gi|28909913|gb|CB331162.1|CB331162
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAAGCC-GCGAAGCCAGCC-ACCC
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAA-GCCCGCGAAGCCAGCCCACCC
EST: gi|148956927|gb|EC902857.2|EC902857
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|5499240|gb|AI855107.1|AI855107
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTTTAAA                         CCTTCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGNNNNNNNA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|31360935|gb|CD445292.1|CD445292
EST:     AATCTAAAGCTCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|211429758|gb|FL434114.1|FL434114
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|148973532|gb|EE024632.2|EE024632
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|67015174|gb|CO443923.1|CO443923
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|166587321|gb|EG226747.1|EG226747
EST:     AAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCTACCCA
genomic: AAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|89246719|gb|DY618506.1|DY618506
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|21809487|gb|BQ667805.1|BQ667805
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAG                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|30087499|gb|CB885705.1|CB885705
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|32848625|gb|CD988306.1|CD988306
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|91056115|gb|EB166533.1|EB166533
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|30705614|gb|CD058845.1|CD058845
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGT
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGT
EST: gi|148943443|gb|EC888502.2|EC888502
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|22472296|gb|BU036776.1|BU036776
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|18170234|gb|BM340074.1|BM340074
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|21432175|gb|BQ547665.1|BQ547665
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|28909531|gb|CB330977.1|CB330977
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAG
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAG
EST: gi|9731694|gb|BE510446.1|BE510446
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|74233488|gb|DT641402.1|DT641402
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|37421141|gb|CF648268.1|CF648268
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCA
EST: gi|60337523|gb|DN204496.1|DN204496
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|148942470|gb|EC887488.2|EC887488
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|211260681|gb|FL463490.1|FL463490
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|31441082|gb|CD510513.1|CD510513
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTG
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTG
EST: gi|26558541|gb|CA830776.1|CA830776
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|60356039|gb|DN223012.1|DN223012
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|76012948|gb|DT940118.1|DT940118
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|148956926|gb|EC902856.2|EC902856
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|33096684|gb|CF056678.1|CF056678
EST:     GAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: GAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|148943442|gb|EC888501.2|EC888501
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|211426698|gb|FL073211.1|FL073211
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|22472098|gb|BU036578.1|BU036578
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|22133724|gb|BQ833869.1|BQ833869
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|76019815|gb|DT946985.1|DT946985
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|60356014|gb|DN222987.1|DN222987
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|211259581|gb|FL073575.1|FL073575
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGA
EST: gi|87156313|gb|DY401102.1|DY401102
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|60343509|gb|DN210482.1|DN210482
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|67022293|gb|CO451042.1|CO451042
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|78544955|gb|DV622453.1|DV622453
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|32920233|gb|CF025045.1|CF025045
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|91867781|gb|EB399793.1|EB399793
EST:     CCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: CCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|20802891|gb|BQ293926.1|BQ293926
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|24768177|gb|CA403306.1|CA403306
EST:     AATCTAAAGCTCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|113703074|gb|EE680578.1|EE680578
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|76927465|gb|DV171256.1|DV171256
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTTAAA                         CCATCAAAACTGACCAATTTTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|148963054|gb|EE014007.2|EE014007
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|76011298|gb|DT938468.1|DT938468
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGNNNNNNNA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|71757175|gb|DR955112.1|DR955112
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|32831789|gb|CD971467.1|CD971467
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGC-AGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|31406207|gb|CD484939.1|CD484939
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|148966200|gb|EE017149.2|EE017149
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|76019816|gb|DT946986.1|DT946986
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|50337566|gb|CO532692.1|CO532692
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCC
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCC
EST: gi|23357493|gb|BU645142.1|BU645142
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCA
EST: gi|37381883|gb|CF627847.1|CF627847
EST:     ATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCC
genomic: ATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAAC-TCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCC
EST: gi|166643460|gb|EG187531.1|EG187531
EST:     ATCGAAAGCCCCCAACGGCAGACAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: ATCGAAAGCCCCCAACGGCAG-CAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|18169164|gb|BM339004.1|BM339004
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|213174383|gb|FM184210.1|FM184210
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|87157088|gb|DY401877.1|DY401877
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|4967116|gb|AI691845.1|AI691845
EST:     -ATCGAAAG-CCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|91867783|gb|EB399794.1|EB399794
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|211087225|gb|FL143698.1|FL143698
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGC
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGC
EST: gi|211529284|gb|FL466450.1|FL466450
EST:     AAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|21809488|gb|BQ667806.1|BQ667806
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|211087229|gb|FL143702.1|FL143702
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCNAAACTGACCAATTTCTA-CAGTAAGCCCGCGAAGCCAGCC-ACCC
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATT-CTAACAGTAAGCCCGCGAAGCCAGCCCACCC
EST: gi|21987379|gb|BQ778907.1|BQ778907
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGNCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGT
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGT
EST: gi|30087500|gb|CB885706.1|CB885706
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|76012947|gb|DT940117.1|DT940117
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTTTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|26456376|gb|CA827959.1|CA827959
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAGCCTAACTCTAAA                         CCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
EST: gi|31406287|gb|CD485019.1|CD485019
EST:     AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAA                         CCATCAAAGCTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA
genomic: AATCGAAAGCCCCCAACGGCAGCAGCAAAAGCAGCAAACCTAACTCTAAAgtaagtaaat ... tctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaatgctgttgatgcaagacccctggctcgtttgctctgccatctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT
                                     ctctgccatctctt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaaatatctttttttgtgtctgtggctcaaaagtaatgcatatgtgctacatctcatatgcattacatgttgctaatgctgttgatgcaagacccctggctcgtttgctctgccatctcttgcagCCATCAAAACTGACCAATTCTAACAGTAAGCCCGCGAAGCCAGCCCACCCAAAAGAAGAGGAGGACAGCGGCCGGGAGGACGCAGAGGAGGACCAGGCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA