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...ataaaagtttattatgaaaatctactttgtactttgtttatctacccacctgtcttcatctggccttgctgttctcatatgttagtctgttttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAACATAACTGTGGATATG
species | Zea mays |
transcript | GRMZM2G063851_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCCTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACTCAGCTTGGAAACEST: gi|32868179|gb|CF007861.1|CF007861
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: CCGATCTCGATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAACEST: gi|78109451|gb|DV527867.1|DV527867
genomic: CCGATCTCGATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAACEST: gi|74035022|gb|DT535512.1|DT535512
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
EST: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAG GATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
genomic: GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgtttgctgcg ... tttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAAC
ccacctgtcttcatctggccttgctgttctcatatgttagtctgttttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAACATAACTGTGGATATG
tctgtttt CT-rich tract
atatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaagtttattatgaaaatctactttgtactttgtttatctacccacctgtcttcatctggccttgctgttctcatatgttagtctgttttgttacagGATCGCTTAAAGAAGCTCAAGTCAGAGCATGGAAAGACCCAGCTTGGAAACATAACTGTGGATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA