Sequence
atgc intronic sequence ATGC exonic sequencegtatatcttgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgttcttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAGTCTAGTGCTATCAAGGTGATTGATTTCGGTAGCACTACTTATGATCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G063792_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 7
gtatatcttgttcttttatatttaattcacctacccaagatttaccttgtgctatgcttgttcttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAGTCTAGTGCTATCAAGGTGATTGATTTCGGTAGCACTACTTATGATCAAC
||||| |||||||| || || || |||| | ||| || | | || | || || | | | | | ||| | || ||||| | | ||| |||| ||||||| || |||||||| || ||||||| ||||||| |||||||||| |||||||| |||||||||||||| || ||||| || ||||| || |
gtatactttgttcttctac--ctatttgacct-tttagcctttttaacgtcttctttttacccggtttagctgattatgattcaacaattttatgttatctttctaatccttctacaatctctgctagGTTTCATCCCGTTCTCCAAAGGAAGGTTCCTATTTCAAGCAGCTGCCCAAGTCCAGTGCTATTAAGGTGATTGATTTTGGCAGCACAACATATGACCAGC
upper sequence: GRMZM2G063792_T04 (Zea mays), 3'ss of exon 7
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatatcttgttcttttatatttaattcacctacccaagatttaccttgtgcta-tgcttgttcttttattgtgtattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAGTCTAGTGCTATCAAGGTGATTGATTTCGGTAGCACTACTTATGATCAAC------
|| | | ||| | || ||| ||| |||| || | || || || | | ||| | || || || |||| || | || ||| | | |||| || |||| || || ||||| || |||||||||||||| |||||||| |||||||| | |
-------------------------------------gtatatctcgaatgcaactgtgtgtgaccttaatgtggccaactatttaagtgctgaaggaat----ttggttgtgtttcctgat--gcagGG----GTCCCGATTACAAAGGGATGTATGCTAT---AAAAGAGTGCCTAAATCAAGTGCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33104273|gb|CF064233.1|CF064233EST: GTACATTAAAGTGCCTGATTACAAA GTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAG
genomic: GTACATTAAAGTGCCTGATTACAAAgtatatcttg ... catttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattggtagcgggggtagaaaaatatggtactgatcctcttttttcatttgccagGTCTCATCCCAATCCCCAAAGGAGGGGTCCTATTACAAGCAGTTGCCCAAGTCTAGTGCTATCAAGGTGATTGATTTCGGTAGCACTACTTATGATCAAC
tactgat putative branch site (score: 2)
tcctcttttttcattt CT-rich tract
tagaaaaatat TA-rich tract