1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtataattttgaagctcgagtcaatttattgcttcaaaaattttcaattggctcatttgatttgtggtgtgtttgacaagattatgatcttatgtttctgtctggcagCGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTTAATGGCCAGTCTCAGGCAGCAAGGAATATGCGTAGTCCTGACCAACAGG
species | Zea mays |
transcript | GRMZM2G062953_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTGAATTCCCCGA-GAGACCCGAGAAACCTGCACCTTTGTTEST: gi|71759744|gb|DR957681.1|DR957681
genomic: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataatttt ... tgtctggcagCGTGCTGGAGCTGAATTCCC-GAAGAGACCCGAGAAACCTGCACCTTTGTT
EST: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTTEST: gi|149076223|gb|EE164821.2|EE164821
genomic: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataatttt ... tgtctggcagCGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTT
EST: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTTEST: gi|148952868|gb|EC898858.2|EC898858
genomic: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataatttt ... tgtctggcagCGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTT
EST: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTG CGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTT
genomic: GATCACATGCAAGATATCCACAATACTATGCAGCATACCATGAGTTGGTGgtataatttt ... tgtctggcagCGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTT
catttgatttgtggtgtgtttgacaagattatgatcttatgtttctgtctggcagCGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTTAATGGCCAGTCTCAGGCAGCAAGGAATATGCGTAGTCCTGACCAACAGG
gtttgac putative branch site (score: 4)
tttctgtct putative PPT
aagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataattttgaagctcgagtcaatttattgcttcaaaaattttcaattggctcatttgatttgtggtgtgtttgacaagattatgatcttatgtttctgtctggcagCGTGCTGGAGCTGAATTCCCGAAGAGACCCGAGAAACCTGCACCTTTGTTTAATGGCCAGTCTCAGGCAGCAAGGAATATGCGTAGTCCTGACCAACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA