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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctcttcattttttttaaaaaaaatatctgtgctggttgctgaaccagtgaaaaactatcctgaactgcatgtgctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGGTATGTTCCAAGTTTTAGTTTTTGC

Basic information

species Zea mays
transcript GRMZM2G062425_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062425_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g21830.1 (Oryza sativa), 3'ss of exon 4
----gtaagctctcttcattttttt----taaaaaaaatatctgtg-ctggttgctgaaccagtgaaa-aactatcctgaactgcatgtgctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGGTATGTTCCAAGTTTTAGTTTTTGC
    ||   |  |  | | || | |    | | || || || ||||  ||  |||  || |||||||| |||| | | ||  |  ||||||||| |||||||||||||||||||| |||||  | ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||                         
gttagtcgtcctttctaaattgtatagtattacaagaaaatttgtggttgcctgcaaaatcagtgaaataactgttccga--ttgatgtgctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211309014|gb|FL381286.1|FL381286
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGC
EST: gi|211493989|gb|FL180888.1|FL180888
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTA-GGATAATGGCAT-CAGTACATCGC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGC
EST: gi|211066115|gb|FL180931.1|FL180931
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAAGATAATGGCATTCAGTTACATCGCATTC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAG-GATAATGGCATTCAGT-ACATCGCATTC
EST: gi|211312231|gb|FK994146.1|FK994146
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAA
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAA
EST: gi|211214235|gb|FL024779.1|FL024779
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCGTTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211066121|gb|FL180937.1|FL180937
EST:     ATATATGATTTG-ACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATT
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATT
EST: gi|211350576|gb|FL379662.1|FL379662
EST:     TATATTGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCA
genomic: TATAT-GATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCA
EST: gi|211493995|gb|FL180894.1|FL180894
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATC
EST: gi|211214236|gb|FL024780.1|FL024780
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAGAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|20208314|gb|BQ134403.1|BQ134403
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211207798|gb|FL424436.1|FL424436
EST:     ATATATGATTTGGACAATCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTT
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTT
EST: gi|211494000|gb|FL180899.1|FL180899
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211034222|gb|FL370386.1|FL370386
EST:     ATATATGATTTGGACAATCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTTCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATT-CC
EST: gi|20803361|gb|BQ294411.1|BQ294411
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211329865|gb|FL380475.1|FL380475
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctggttgctgaaccagtgaaaaactatcctgaactgcatgtgctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGGTATGTTCCAAGTTTTAGTTTTTGC
                                           tgctaat  putative branch site (score: 2)
                     aaaaactat  TA-rich tract