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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctcttcattttttttaaaaaaaatatctgtgctggttgctgaaccagtgaaaaactatcctgaactgcatgtgctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG

Basic information

species Zea mays
transcript GRMZM2G062425_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062425_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g21830.1 (Oryza sativa), 3'ss of exon 4
----gtaagctctcttcattttttt----taaaaaaaatatctgtg-ctggttgctgaaccagtgaaa-aactatcctgaactgcatgtgctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG
    ||   |  |  | | || | |    | | || || || ||||  ||  |||  || |||||||| |||| | | ||  |  ||||||||| |||||||||||||||||||| |||||  | ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||
gttagtcgtcctttctaaattgtatagtattacaagaaaatttgtggttgcctgcaaaatcagtgaaataactgttccga--ttgatgtgctaactgcagAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGCAATTTCTTGTGGTGTTTATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346456|gb|DN213429.1|DN213429
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60350894|gb|DN217867.1|DN217867
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60340981|gb|DN207954.1|DN207954
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211235601|gb|FL469488.1|FL469488
EST:     CTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: CTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|32916032|gb|CF020844.1|CF020844
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60400550|gb|DN233357.1|DN233357
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|18654978|gb|BM499783.1|BM499783
EST:     AAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: AAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211409605|gb|FL451596.1|FL451596
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|149058791|gb|EE156812.2|EE156812
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|30087019|gb|CB885227.1|CB885227
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|4646952|gb|AI622027.1|AI622027
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|71768330|gb|DR966267.1|DR966267
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|27769705|gb|CB042895.1|CB042895
EST:     AAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: AAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60337208|gb|DN204181.1|DN204181
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|71760661|gb|DR958598.1|DR958598
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|18180255|gb|BM381465.1|BM381465
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|91874149|gb|EB404106.1|EB404106
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|29544033|gb|CB604413.1|CB604413
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60347033|gb|DN214006.1|DN214006
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|12968348|gb|BG265294.1|BG265294
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|32855392|gb|CD995073.1|CD995073
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|71444605|gb|DR825655.1|DR825655
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|27576007|gb|CA998701.1|CA998701
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|20208345|gb|BQ134434.1|BQ134434
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|211448985|gb|FL452542.1|FL452542
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|76284272|gb|DV023840.1|DV023840
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|78073968|gb|DV502402.1|DV502402
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60339297|gb|DN206270.1|DN206270
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|50322938|gb|CO518064.1|CO518064
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|88752056|gb|DY536197.1|DY536197
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|78544379|gb|DV621877.1|DV621877
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|8516517|gb|BE123242.1|BE123242
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|71775282|gb|DR973160.1|DR973160
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|32916033|gb|CF020845.1|CF020845
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|27521916|gb|CA989022.1|CA989022
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|30031764|gb|CB833615.1|CB833615
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|16927502|gb|BM080571.1|BM080571
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|60339706|gb|DN206679.1|DN206679
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAAGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
EST: gi|78118087|gb|DV536474.1|DV536474
EST:     ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGA                         AAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC
genomic: ATATATGATTTGGACAAGCATCCTGAGGTGTCATTAAAGAAGGCCTATGAgtaagctctc ... ctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctggttgctgaaccagtgaaaaactatcctgaactgcatgtgctaattgcagAAATAGCTTGAAGCTTGCTAAGGATAATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG
                                           tgctaat  putative branch site (score: 2)
                     aaaaactat  TA-rich tract