1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacactactacaaaaatctacatttgttgatacaacctctcctctctagcgacgatctaaatatttcctttattgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTCCTGACCCAAAGGAACTGCACAAGACAGTTTCTACTTTAGAATATGGTG
species | Zea mays |
transcript | GRMZM2G062084_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAG GATTCATTCGAGGATGACAEST: gi|211446595|gb|FL323950.1|FL323950
genomic: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAGgtacactact ... tgtatttcagGATTCATTCGAGGATGACA
EST: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAG GATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTEST: gi|211012716|gb|FL335928.1|FL335928
genomic: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAGgtacactact ... tgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGT
EST: GNGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAG GATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTEST: gi|211537147|gb|FL314811.1|FL314811
genomic: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAGgtacactact ... tgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGT
EST: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAG GATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTEST: gi|211420411|gb|FL361820.1|FL361820
genomic: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAGgtacactact ... tgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGT
EST: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAG GATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTEST: gi|211072836|gb|FL342717.1|FL342717
genomic: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAGgtacactact ... tgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGT
EST: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAG GATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGT
genomic: GTGATTCCCATGTTCCATTTAGGGACAGCAAGCTCACAATGCTACTACAGgtacactact ... tgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGT
gatacaacctctcctctctagcgacgatctaaatatttcctttattgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTCCTGACCCAAAGGAACTGCACAAGACAGTTTCTACTTTAGAATATGGTG
atctaaa putative branch site (score: 3)
tttcctttatt putative PPT
taaatatttcctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactactacaaaaatctacatttgttgatacaacctctcctctctagcgacgatctaaatatttcctttattgtatttcagGATTCATTCGAGGATGACAAATCAAAAATCCTAATGATTCTGTGTGCTAGTCCTGACCCAAAGGAACTGCACAAGACAGTTTCTACTTTAGAATATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA