Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgttacataatctgtcaggctgattcagtcctgaactgatgaaatgtaatggtttaatttgactttctttcgttctgacatgtgctacaatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC

Basic information

species Zea mays
transcript GRMZM2G061928_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061928_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 3'ss of exon 4
-tctgttacataatctgtcaggctgattcagtcctgaactgatgaaatgtaatggtttaatttgactttctttcgttctgac-atgtgctacaatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC
 | ||||  || || ||  |||    | || |  | | |||  | | | || |  | | |    |  ||   |  || | ||  ||    | ||||||| |||| || || ||||| |||||||||||||| || || || |||||||||||| |||||||||| ||||||||||||||||| |||||||||||  | ||||
ctgtgttgtattatttgataggtc--tgcatttgtaagctgtaggagtttattcttgtcaaagaatattacatttttgtaactgtgcttcataatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCC

upper sequence: GRMZM2G061928_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 4
-tctgttacataatc---tgtcaggctgattcagtcctgaactgatgaaatgtaatggtttaatttgactttctttcgttctgacatgtgctacaatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC
 |||  |  ||  ||   | |    |     || | ||||  ||  ||  ||  ||   |   | |  | || | |  |||| || | |   |  | | |  |||||||||| ||  |||||||||||||||| || ||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||| ||||| || || |
ttcttgtggattctcaaatcttgacccttcgcaattctgacttgtgga--tgccattactcg-tctatcattatattcttcttacct-tctaattaatggtcagGTTGATCGGGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTC

upper sequence: GRMZM2G061928_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 3'ss of exon 4
tctgttacataatctgtcaggctgattcagtcctgaactgatgaaatgtaatggtttaatttgactttctttcgttctgacatgtgcta-caatttgat--agGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC
               || ||       ||    | |  |  | | ||| ||||||||  ||  |      |   |    ||| ||   |    | | ||  ||||||||||  | || |||||||||||||| ||||||||||| |||||||| |||||  | ||  | ||||||||||||||||| || ||||| |||||| 
---------------gttagatgagaacaaagttta-ttttttatatg-aatggttttcttatagcaaaatcaatctcaacaagtttgaattctctcattcagGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCA

upper sequence: GRMZM2G061928_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 3'ss of exon 5
-------tctgttacataatctgtcaggctgattcagtcctgaactgatgaaatg-taatggtttaatttgactttctttcgttctgacatgtgctacaatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC
         ||  |   | |   ||     |||   ||| | |  |  | |   | |  ||| ||   |  ||   |  || ||   |  |   |  || |||   ||||||||||  || |||||||||||||||| || || ||||||||||| ||| ||||| | ||||||||||| ||  | || || || |||||  | ||| 
gtacgtcattgccagtgactaactctaaacgatcttgtcttcatatcttcacgagctgttggcttggctcaaccaccgctcctt--aatcttaacctca-tttttcagGTTGATCGTATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCA

upper sequence: GRMZM2G061928_T02 (Zea mays), 3'ss of exon 4
lower sequence: EFJ27171 (Selaginella moellendorffii), 3'ss of exon 2
tctgttacataatctgtcaggctgattcagtcctgaactgatgaaatgt-aatggtttaat-ttgactttctttcgttctgacatgtgctacaatt----tgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC
                                              ||| ||| |||| || ||  |||||  |  ||   |  | ||||    |     |   |||||||||||||||| || || || || || || || ||||| ||||| || |||||| | || || |||||||||||||||||  | || ||  | ||  
---------------------------------------------gtgtgaatagtttgatcttttctttcgctactttccagttatgctttggtcgttcttccagGTTGATCGAGTCCTTTATTCCTCGGTGGTTTATCCACACAACTATGGATTTGTTCCACGCACGCTGTGTGAAGACAATGACCCGCTTGACGTTCTTGTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146691|gb|FK994973.1|FK994973
EST:     AGGGAAGCAAAGTTCAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCA
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCA
EST: gi|211145266|gb|FK994966.1|FK994966
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|31909409|gb|CD650904.1|CD650904
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146700|gb|FK994982.1|FK994982
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148123|gb|FK994991.1|FK994991
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149572|gb|FK995003.1|FK995003
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211143831|gb|FK994953.1|FK994953
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146694|gb|FK994976.1|FK994976
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149573|gb|FK995004.1|FK995004
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146702|gb|FK994984.1|FK994984
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146692|gb|FK994974.1|FK994974
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAATTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148133|gb|FK995001.1|FK995001
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTG
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTG
EST: gi|211145267|gb|FK994967.1|FK994967
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211091461|gb|FK999164.1|FK999164
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145261|gb|FK994961.1|FK994961
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146703|gb|FK994985.1|FK994985
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149571|gb|FK995002.1|FK995002
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149575|gb|FK995006.1|FK995006
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145265|gb|FK994965.1|FK994965
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145262|gb|FK994962.1|FK994962
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146693|gb|FK994975.1|FK994975
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148126|gb|FK994994.1|FK994994
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145258|gb|FK994958.1|FK994958
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|28930839|gb|CB334200.1|CB334200
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211098874|gb|FK999203.1|FK999203
EST:     AGKGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145260|gb|FK994960.1|FK994960
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146695|gb|FK994977.1|FK994977
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145263|gb|FK994963.1|FK994963
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211091460|gb|FK999163.1|FK999163
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146701|gb|FK994983.1|FK994983
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|74237956|gb|DT645870.1|DT645870
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149576|gb|FK995007.1|FK995007
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146698|gb|FK994980.1|FK994980
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145259|gb|FK994959.1|FK994959
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211143833|gb|FK994955.1|FK994955
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211093927|gb|FK999180.1|FK999180
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211270190|gb|FL112873.1|FL112873
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211143834|gb|FK994956.1|FK994956
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211143830|gb|FK994952.1|FK994952
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148120|gb|FK994988.1|FK994988
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148131|gb|FK994999.1|FK994999
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149574|gb|FK995005.1|FK995005
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145269|gb|FK994969.1|FK994969
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148121|gb|FK994989.1|FK994989
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211143828|gb|FK994950.1|FK994950
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146699|gb|FK994981.1|FK994981
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|28873717|gb|CB329666.1|CB329666
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148129|gb|FK994997.1|FK994997
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211270194|gb|FL112877.1|FL112877
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148119|gb|FK994987.1|FK994987
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145264|gb|FK994964.1|FK994964
EST:     AGGGAAGCAAAGTTNAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148122|gb|FK994990.1|FK994990
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148127|gb|FK994995.1|FK994995
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146697|gb|FK994979.1|FK994979
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148128|gb|FK994996.1|FK994996
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145270|gb|FK994970.1|FK994970
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|5325092|gb|AI783283.1|AI783283
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTATACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211143829|gb|FK994951.1|FK994951
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211146690|gb|FK994972.1|FK994972
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149578|gb|FK995009.1|FK995009
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211145271|gb|FK994971.1|FK994971
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211149577|gb|FK995008.1|FK995008
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|211148130|gb|FK994998.1|FK994998
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
EST: gi|31358333|gb|CD442690.1|CD442690
EST:     AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG                         GTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC
genomic: AGGGAAGCAAAGTTAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtatatgttc ... aatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaatggtttaatttgactttctttcgttctgacatgtgctacaatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC
                             ttctgac  putative branch site (score: 2)
         tttaatttgacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgttacataatctgtcaggctgattcagtcctgaactgatgaaatgtaatggtttaatttgactttctttcgttctgacatgtgctacaatttgatagGTTGATCGAGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA