1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttagagcatctatggttttggccttcgtggctagatcaacataaattacagctcaattggtcattctagttttcttactgatcctgcaatcctctttcagACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAG
species | Zea mays |
transcript | GRMZM2G061783_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGATGGCGAGCTGTTGATCCGGGCGAACCAGGGGCACACAGTAACA ACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGEST: gi|76017295|gb|DT944465.1|DT944465
genomic: AGGAAGATGGCGAGCTGTTGATCCGGGCGAACCAGGGGCACACAGTAACAgtatgttctc ... cctctttcagACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTG
EST: AGGAAGATGGCGAGCTGTTGATCCGGGCGAACCAGGGGCACACAGTAACA ACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGEST: gi|50336497|gb|CO531623.1|CO531623
genomic: AGGAAGATGGCGAGCTGTTGATCCGGGCGAACCAGGGGCACACAGTAACAgtatgttctc ... cctctttcagACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTG
EST: AGGAAGATGGCGAGCTGTTGATCCGGGCGAACCAGGGGCACACAGTAACA ACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTG
genomic: AGGAAGATGGCGAGCTGTTGATCCGGGCGAACCAGGGGCACACAGTAACAgtatgttctc ... cctctttcagACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTG
ttacagctcaattggtcattctagttttcttactgatcctgcaatcctctttcagACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAG
tactgat putative branch site (score: 2)
tcctctttc putative PPT
ttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagagcatctatggttttggccttcgtggctagatcaacataaattacagctcaattggtcattctagttttcttactgatcctgcaatcctctttcagACTGTCACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC