1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttctattccacgaacttgtagaaagtttcaagatttgctctgttgcattttgtgttcagtattgcattcagtgttctgatatataacctagacactgcagAAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCATCTCCTTTGTTACTTCTGTAAAAGTAAATGCAAAACGTGTACTTTCAAAGGCAAAG
species | Zea mays |
transcript | GRMZM2G061094_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGAAAGATGGTTCAAGCACCGCCGAGGACTCCATAATTGACATAGACAG AAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCATEST: gi|211276972|gb|FL390070.1|FL390070
genomic: ACGAAAGATGGTTCAAGCACCGCCGAGGACTCCATAATTGACATAGACAGgttctattcc ... gacactgcagAAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCAT
EST: ACGAAAGATGGTTCAAGCACCGCCGAGGACTCCATAATTGACATAGACAG AAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCATCTCCTT
genomic: ACGAAAGATGGTTCAAGCACCGCCGAGGACTCCATAATTGACATAGACAGgttctattcc ... gacactgcagAAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCATCTCCTT
cattttgtgttcagtattgcattcagtgttctgatatataacctagacactgcagAAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCATCTCCTTTGTTACTTCTGTAAAAGTAAATGCAAAACGTGTACTTTCAAAGGCAAAG
atataac putative branch site (score: 345)
tgatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctattccacgaacttgtagaaagtttcaagatttgctctgttgcattttgtgttcagtattgcattcagtgttctgatatataacctagacactgcagAAATGGAAAGATGCTGATGGAGGAGACAGACATAGATGATAGCATCTCCTTTGTTACTTCTGTAAAAGTAAATGCAAAACGTGTACTTTCAAAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG