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gtagtagaataatgaagataatccttcattttctccacgcatgctgttgcataataaattatttgtgtcattcaatctttaactggaatccatatgcagctgttttatggtgcccatttcaaatgagttttctgaatcactgcattatcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGGTAGCTACTCCAAAG
species | Zea mays |
transcript | GRMZM2G060977_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|19058249|gb|BM736916.1|BM736916
genomic: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAGgtagtagaat ... atcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: CTCGCGGGTTTGGCTATGTACCATTCGCCTCAGCTGCCGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|32942400|gb|CF047219.1|CF047219
genomic: CTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAGgtagtagaat ... atcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGCGGGTTTGGCTATGTAGCATTCGCCTCAGCTGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCEST: gi|29130292|gb|CB380996.1|CB380996
genomic: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAGgtagtagaat ... atcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGC
EST: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGEST: gi|87152201|gb|DY396990.1|DY396990
genomic: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAGgtagtagaat ... atcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
EST: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAG AATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
genomic: GATCTCGCGGGTTTGGCTATGTAACATTCGCCTCAGCTGACGATGCAAAGgtagtagaat ... atcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAG
gttttatggtgcccatttcaaatgagttttctgaatcactgcattatcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGGTAGCTACTCCAAAG
ttatcctttc CT-rich tract
atttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtagaataatgaagataatccttcattttctccacgcatgctgttgcataataaattatttgtgtcattcaatctttaactggaatccatatgcagctgttttatggtgcccatttcaaatgagttttctgaatcactgcattatcctttcagAATGTTCTTGATTGCGAGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGGTAGCTACTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT