1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATTGTAA
species | Zea mays |
transcript | GRMZM2G060564_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAEST: gi|211520834|gb|FL034041.1|FL034041
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCEST: gi|211397639|gb|FL034039.1|FL034039
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGC
EST: GTGGAAAGTGTGGCGAGASC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCCAATTCEST: gi|211520835|gb|FL034042.1|FL034042
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGC-AATTC
EST: GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAEST: gi|78090964|gb|DV519338.1|DV519338
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: GTGCAAAGTGTGGCCAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCCTCAACCCGCTTCTTGCTGCAAEST: gi|211520839|gb|FL034046.1|FL034046
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAEST: gi|211520837|gb|FL034044.1|FL034044
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTTCAGTTGCATCAACCCGCTTCTTGCTGCAEST: gi|211520836|gb|FL034043.1|FL034043
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATT-CAGTTGCATCAACCCGCTTCTTGCTGCA
EST: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAEST: gi|211520838|gb|FL034045.1|FL034045
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
ctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATTGTAA
ttctaac putative branch site (score: 1)
cctgctttcttttc putative PPT
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATTGTAA
- - - - - -tggatgc
- - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctgct