Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT

Basic information

species Zea mays
transcript GRMZM2G060564_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060564_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g03180.1 (Oryza sativa), 3'ss of exon 4
ttggggcaatatggatgca--agtccccatttcttacatgaaaacctc--tgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT
   |       || ||| |  | || ||| | ||  ||  |   | |   | ||| | || |    ||  | |   | |||| ||   | |   |  |||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| | || || ||||||||||||
-atgcttgtcttgaatggagtaatctccaatactgtcactattcctttaattatgctatttttgtgcttaccttagaactaactagtactt---tatttttcagGTGTTTCTGTGCTTTGGTAATTCAGTTGCTTCAACCCGCTTCTTGCTCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATT

upper sequence: GRMZM2G060564_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G37590.1 (Glycine max), 3'ss of exon 4
ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT
     |||  ||   |      |    |||||        ||  |    ||  ||| ||        | ||    | | |       |  ||  |||||||| ||||| |||||||| |||||||| || |||||||||||  |  ||||||||||||||||||| || ||||| || ||||| || ||||| |||
agcacgcaggattcctttggagctggttttctgggtcttgaattttctgtggctttttcaagtagcatgctttatttattcctatgcgtctttgtttcagGTTTTCCTCTGCTTTGGAAATTCAGTCGCCTCAACCCGCTTTCTATTGCAAGATGAATTTAACATTCAAACCACGCAATGTGATAATTGCATTATT

upper sequence: GRMZM2G060564_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G01990.3 (Glycine max), 3'ss of exon 3
ttggggcaatatggatgcaagtccccattt---cttacatgaaaacctctgatgtttttgtctctctatcttctaacctaagtaaggcc---tgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT
       ||   | | ||| |   || ||    ||    |         |||  ||| |||   | | |    |    ||  ||   |    ||      |||||||| ||||| |||||||| |||||||| || ||||| |||||  |  ||||||||||||||||||| || || || || ||||| || ||||| |||
------taaagagcacgcaggattcctttggagctggttttctgggtcttgaattttctgtggttttgtagcatgctttatttatacctatgtgtcgctgtttcagGTTTTCCTCTGCTTTGGAAATTCAGTCGCCTCAACTCGCTTTCTATTGCAAGATGAATTTAACATTCAAACTACGCAATGTGATAATTGCATTATT

upper sequence: GRMZM2G060564_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaag--taaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT
 ||   ||| ||  ||| |       | |   | ||   |  | | ||    || |     | |  |   ||  | |||  |     |  |||| | || ||||  |||| |||||||| ||||| || ||||||||||||||  || |||||||||| || ||||||||||| ||  | |||||||| |||||||||
gtgtaacaa-attcatggattcttttagtcagttcactgaggctt-tgtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211520836|gb|FL034043.1|FL034043
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71449020|gb|DR830070.1|DR830070
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211520834|gb|FL034041.1|FL034041
EST:     GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGC
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGC
EST: gi|78078643|gb|DV507055.1|DV507055
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|91048377|gb|EB158795.1|EB158795
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|50336576|gb|CO531702.1|CO531702
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|76011810|gb|DT938980.1|DT938980
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211397639|gb|FL034039.1|FL034039
EST:     GTGGAAAGTGTGGCGAGASC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCCAATTC
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGC-AATTC
EST: gi|211397637|gb|FL034037.1|FL034037
EST:     GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|101399172|gb|EB821460.1|EB821460
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71330287|gb|DR801905.1|DR801905
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|74234235|gb|DT642149.1|DT642149
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|26456824|gb|CA828407.1|CA828407
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|76284637|gb|DV024205.1|DV024205
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|148953515|gb|EE153023.2|EE153023
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211520833|gb|FL034040.1|FL034040
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|149095487|gb|EE181140.2|EE181140
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|20512803|gb|BQ280001.1|BQ280001
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71447386|gb|DR828436.1|DR828436
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211397638|gb|FL034038.1|FL034038
EST:     GTGGAAAGTGTGGCGAGASC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211520838|gb|FL034045.1|FL034045
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|148930645|gb|EC872835.2|EC872835
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|76014988|gb|DT942158.1|DT942158
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|78090964|gb|DV519338.1|DV519338
EST:     GTGCAAAGTGTGGCCAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCCTCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|148937865|gb|EC882083.2|EC882083
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|148949975|gb|EC895492.2|EC895492
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211520835|gb|FL034042.1|FL034042
EST:     GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|74245152|gb|DT653066.1|DT653066
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|149089290|gb|EE178503.2|EE178503
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71321160|gb|DR797280.1|DR797280
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71311330|gb|DR791989.1|DR791989
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|78107038|gb|DV525456.1|DV525456
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211520837|gb|FL034044.1|FL034044
EST:     GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTTCAGTTGCATCAACCCGCTTCTTGCTGCA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATT-CAGTTGCATCAACCCGCTTCTTGCTGCA
EST: gi|71312763|gb|DR792909.1|DR792909
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|211520839|gb|FL034046.1|FL034046
EST:     GTGGAAAGTGTGGCGAGAGC-GGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71768464|gb|DR966401.1|DR966401
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|71315575|gb|DR794393.1|DR794393
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
EST: gi|50337111|gb|CO532237.1|CO532237
EST:     GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAG                         GTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA
genomic: GTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 116

ATATGTCTGTTGCGCTGGCTACATGCCATGCAGTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 197

ATATGTCTGTTGCGCTGGCTACATGCCATGCAGTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 219

ATATGTCTGTTGCGCTGGCTACATGCCATGCAGTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 311

ATATGTCTGTTGCGCTGGCTACATGCCATGCAGTGGAAAGTGTGGCGAGAGCCGGTGCCCAGAGTTCTGTCTTGCAACTGAGgtacaaggac ... ttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT
                      ttctaac  putative branch site (score: 311)
                                       cctgctttcttttc  putative PPT
                                            tttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaagtaaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG