1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagtttagccttccacaccaacacttgaagttatccattttgctgttgtctttaatgagaaacattttccattttcctgttgtcttccatcgcactgttgatctcagtcatgacgccagtctctttgacttgcactaccaattataacatctcgtgacttattggactttttgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGTAGGGATCGCACGGAGATGGAAAACGTTATATTCAAGCTTTTTGAAAGGC
species | Zea mays |
transcript | GRMZM2G060284_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG GAAAAGAAGAAGCAAGCACCAGCGAAACCATCTGATGCCAAAAGAACTCGTEST: gi|211224212|gb|FK968311.1|FK968311
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG GAAAAGAAGAAGCAAGCACCAGCGAAACCATCTGATGCCAAAAGAACTCGTEST: gi|149085565|gb|EE175077.2|EE175077
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGTEST: gi|13490745|gb|BG517509.1|BG517509
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGTEST: gi|76937460|gb|DV175147.1|DV175147
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGTEST: gi|211224214|gb|FK968313.1|FK968313
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
EST: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAG GAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
genomic: GCATGAGGCCAATGCCTGGCATTGTTGGTCTCATATCTTCTAGTTCAAAGgtagtttagc ... tgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGT
gacttgcactaccaattataacatctcgtgacttattggactttttgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGTAGGGATCGCACGGAGATGGAAAACGTTATATTCAAGCTTTTTGAAAGGC
ttataac putative branch site (score: 50)
ctttttgctt putative PPT
aattataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttagccttccacaccaacacttgaagttatccattttgctgttgtctttaatgagaaacattttccattttcctgttgtcttccatcgcactgttgatctcagtcatgacgccagtctctttgacttgcactaccaattataacatctcgtgacttattggactttttgcttgccagGAAAAGAAGAAGCAAGCACCAGTGAAACCATCTGATGCCAAAAGAACTCGTAGGGATCGCACGGAGATGGAAAACGTTATATTCAAGCTTTTTGAAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT