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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataagagggatcatccccaactgttttaatgaccccatcctgtactgttccaagcaacaccaatgctgaacgctgtaacctggatgttccgtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGTCCGGTCCAGAGACCTGTGGGTGCTCACCGGCGACGACGACGTGATCGAC

Basic information

species Zea mays
transcript GRMZM2G058450_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058450_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g67850.1 (Oryza sativa), 3'ss of exon 4
-ataagagggatcatccccaactgtttta--atgaccccatcctgtactgttccaagcaacaccaatgctgaacgctgtaacctggatgttccgtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGTCCGGTCCAGAGACCTGTGGGTGCTCACCGGCGACGACGACGTGATCGAC
  |   |    |  |      ||  |     ||   |||||       | |||||    |  |  || | || |     ||     |  |   | |  | |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||
gtttcaaactcttgtttgagcctagtcaggcatcttcccatttgtgtttattccatttcat-cagattccgaccctaacaattc--acatcatgggttttcagGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTCCGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28931313|gb|CB334674.1|CB334674
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGA
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGA
EST: gi|211144877|gb|FL420891.1|FL420891
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|211375380|gb|FL443205.1|FL443205
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|50325950|gb|CO521076.1|CO521076
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|148930523|gb|EE285118.2|EE285118
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|71332531|gb|DR803233.1|DR803233
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
EST: gi|60394714|gb|DN227584.1|DN227584
EST:     GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTG                         GTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT
genomic: GTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgtattgctcc ... gtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttccaagcaacaccaatgctgaacgctgtaacctggatgttccgtgactgcagGTACACAAGGTCCCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGGGTCCGGTCCAGAGACCTGTGGGTGCTCACCGGCGACGACGACGTGATCGAC
                           ctgtaac  putative branch site (score: 3)