Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggatcttcgattgtatttgatcaaactaggcctggttgcattgcataatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTTAGATTGATAAATGTAATA

Basic information

species Zea mays
transcript GRMZM2G058252_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058252_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g43620.1 (Oryza sativa), 3'ss of exon 4
ggatcttcgattgtatttgatcaaa-ctaggcctggttgcattgc-ataatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCG-ATCAATGT-TAGATTGATAAATGTAATA
  ||  |   |||  ||| |  ||| ||    ||| |   | ||    |   |     ||| | | |     || |  |||| | | |  ||| || |||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| ||||| |||||  |   | | | |||   |||| |||   |||||  
--attgttctttgcttttaaagaaatcttttgctgatcaaactgttgcacataccatattcctttgtccaacgtgtacttatttgttttgttcgacctacagGTGCAACAATGTTCTGTATCTCCGAGGCGTTCCAGAGGATGCCGAGATAGAGGATGCAGAATGAGATAACCTGGACCTATGCGCAGATCGATTTGTGTAA--

upper sequence: GRMZM2G058252_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g08090.1 (Oryza sativa), 3'ss of exon 4
-ggatcttcgattgtatttgatcaa-actaggcctggttgcattgcataatcatttggttcttgtatgattagt-ttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTT-AGATTGATAAATGTAATA
  | |  |    ||  |||| |||| | |  |  ||    ||   |||| ||| |||  |  ||||| |||  | ||| ||   |||||         |||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||| || || |||||     ||  | ||||  |||||||| | |||||| 
ttgcttgttacctgcttttgttcaacattgtggttgcccacaaaacatattcaattgtctgatgtataattcttatttgtttcatttgtgaact---gtacagGTGCAACAACGTTTTGTATCTCCGAGGCGTTCCAGAGGATACCGAGATAGAGGATGCGGAATGAGATAGCCCGGGCCATGTCCAGATTGATTATTGTAAT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176423|gb|BM351382.1|BM351382
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211439749|gb|FL418521.1|FL418521
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211084505|gb|FL378043.1|FL378043
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|40336095|gb|CK370165.1|CK370165
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211311342|gb|FL401413.1|FL401413
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211450560|gb|FL421157.1|FL421157
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211500293|gb|FL429987.1|FL429987
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211401205|gb|FL425452.1|FL425452
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32906951|gb|CF011764.1|CF011764
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211443716|gb|FL399729.1|FL399729
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|9733260|gb|BE512012.1|BE512012
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211104786|gb|FL388174.1|FL388174
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211445444|gb|FL381391.1|FL381391
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211443104|gb|FL373028.1|FL373028
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211024433|gb|FL373972.1|FL373972
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211437155|gb|FL418511.1|FL418511
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211302695|gb|FL370644.1|FL370644
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGARGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211045553|gb|FL403377.1|FL403377
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|18168539|gb|BM338379.1|BM338379
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|213182763|gb|FM187281.1|FM187281
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211303208|gb|FL395167.1|FL395167
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32940246|gb|CF045065.1|CF045065
EST:     ACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: ACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|76292086|gb|DV031654.1|DV031654
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32932015|gb|CF036827.1|CF036827
EST:     GAATACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|91878488|gb|EB408445.1|EB408445
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32931595|gb|CF036407.1|CF036407
EST:     GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211394994|gb|FL377436.1|FL377436
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211429137|gb|FL408427.1|FL408427
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCG
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCG
EST: gi|60347187|gb|DN214160.1|DN214160
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|166552824|gb|EG234325.1|EG234325
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTTCCGAGGCGTTCCAG
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCT-CCGAGGCGTTCCAG
EST: gi|211436448|gb|FL384524.1|FL384524
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211278511|gb|FL371989.1|FL371989
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|9733261|gb|BE512013.1|BE512013
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211313369|gb|FL401428.1|FL401428
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211286499|gb|FL423658.1|FL423658
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211539230|gb|FL395839.1|FL395839
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|6020407|gb|AW065335.1|AW065335
EST:     GAGTACATTGATGGTCAATTCTCTGNAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|76292087|gb|DV031655.1|DV031655
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211542426|gb|FL402997.1|FL402997
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGSGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211309012|gb|FL381284.1|FL381284
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32930046|gb|CF034858.1|CF034858
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|113792024|gb|DW914178.1|DW914178
EST:     GGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32908639|gb|CF013452.1|CF013452
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211092578|gb|FL396358.1|FL396358
EST:     GAGTACATNGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211539434|gb|FL405542.1|FL405542
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|30052148|gb|AI065437.2|AI065437
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|60359558|gb|DN226531.1|DN226531
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|18176857|gb|BM351790.1|BM351790
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|9953187|gb|BE639770.1|BE639770
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTTCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211514457|gb|FL429043.1|FL429043
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|91050967|gb|EB161385.1|EB161385
EST:     CTGGAAACCTGGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: CTGGAAACCT-GGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211334839|gb|FL416312.1|FL416312
EST:     GAGTACATTGATGGTCAATTCTSTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACARCGTCATGTATCTCCGAGGCGTTCCATAGGATGCA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCA
EST: gi|15053713|gb|BI359258.1|BI359258
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211531121|gb|FL427366.1|FL427366
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|6956550|gb|AW428645.1|AW428645
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211197152|gb|FL410127.1|FL410127
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGAT
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGAT
EST: gi|211530711|gb|FL414632.1|FL414632
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211521185|gb|FL395740.1|FL395740
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211154870|gb|FL390962.1|FL390962
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCWGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|91878487|gb|EB408444.1|EB408444
EST:     GAGTACATTGATGGTCAATTTTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32909820|gb|CF014632.1|CF014632
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211092584|gb|FL396364.1|FL396364
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|211431945|gb|FL418470.1|FL418470
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATTGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|45847499|gb|CN071442.1|CN071442
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|32939712|gb|CF044531.1|CF044531
EST:     GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|15053712|gb|BI359257.1|BI359257
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
EST: gi|22133617|gb|BQ833807.1|BQ833807
EST:     GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAG                         GTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA
genomic: GAGTACATTGATGGTCAATTCTCTGGAAACCTGGGAGAGATTCTGATCAGgtaatgttta ... ctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTTAGATTGATAAATGTAATA
                                        tacttct  CT-rich tract
                 tatgattagttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggatcttcgattgtatttgatcaaactaggcctggttgcattgcataatcatttggttcttgtatgattagtttttttatgtttgtacttctacatacagGTGCAACAACGTCATGTATCTCCGAGGCGTTCCAGAGGATGCAGAGATAGAGGACGCAGAGTGAGAAGATGCGATCAATGTTAGATTGATAAATGTAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG