Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatctagctactgttaaccattttcaaagttttaaattatgctgtttcagtttattcttgatttgcaaatcatttccaaagtcccttatgattcaatcttccataattagcataagatcatgtttatcaaaacaaactaataatttgattattcacattcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC

Basic information

species Zea mays
transcript GRMZM2G057853_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057853_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g43250.1 (Oryza sativa), 3'ss of exon 4
gtttatctagctactgttaaccattttcaaagttttaaattatgctgtttcagtt-tattcttgatttgcaaatc---atttccaaagtcccttatgattcaatcttccataattagcataagatcatgtttatcaaaacaaactaataatttgattattcacattcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC
||||||||| || ||||| ||  ||  ||| ||| | ||| ||   ||||   |  |||   |   |||| ||||   | |  ||||  |  || |         |      ||   |||  |||| |||||| ||| |  || || ||| |     | | |||   ||  |||| |||||||| |||||||| |||||  | ||  ||| ||| || || ||||| ||||||||||| || ||||||| |||||||||||||| ||| || |
gtttatctaacttctgttcacatttaccaatgttctcaatcatttagtttggttcctatatattccttgctaatctaaactagcaaacccatttcttccattgaatagtgctatagtcatctgatc-tgtttaacaatagcaattactaagt-----aataacaacatttcagGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCATGTACTTCTGCATCAATTGCATGGAGTCCAAGAAGAGGTGAAAGTCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211528448|gb|FL327575.1|FL327575
EST:     GGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTTCAG                         GCAGAGTTCCAAAACATTACTGATCCA
genomic: GGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTT-CAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCA
EST: gi|211094476|gb|FL367309.1|FL367309
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCNATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|148953595|gb|EC898949.2|EC898949
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211023880|gb|FL345724.1|FL345724
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACAT
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACAT
EST: gi|211131766|gb|FL358659.1|FL358659
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|148930898|gb|EC873352.2|EC873352
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211391014|gb|FL322565.1|FL322565
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACNAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCGCA-TCTCTAGATTTGGAAAACCTGC
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATC-CAATCTCTAGATTTGGAAAACCTGC
EST: gi|71773953|gb|DR971841.1|DR971841
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGAAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|93012339|gb|EB637859.1|EB637859
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|71435208|gb|DR816258.1|DR816258
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAAACCTGC
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAA-CCTGC
EST: gi|76294071|gb|DV033639.1|DV033639
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|93284260|gb|EB676524.1|EB676524
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211260370|gb|FL340609.1|FL340609
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTC-AAAACATTACTGATCCAATCTCTAGATT
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATT
EST: gi|78080510|gb|DV508922.1|DV508922
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211400243|gb|FL372546.1|FL372546
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|50328005|gb|CO523131.1|CO523131
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGG
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGG
EST: gi|211270383|gb|FL351867.1|FL351867
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATC
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATC
EST: gi|211449141|gb|FL349636.1|FL349636
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGNTTCCAAAACATTACTGATCCAATCTCCAGATTTGGAAAACCTGC
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAG-TTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGC
EST: gi|76909537|gb|DV163411.1|DV163411
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211136424|gb|FL362108.1|FL362108
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATT
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATT
EST: gi|71772782|gb|DR970707.1|DR970707
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|89252106|gb|DY623892.1|DY623892
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|71444110|gb|DR825160.1|DR825160
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211332970|gb|FL315997.1|FL315997
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCT
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCT
EST: gi|71773952|gb|DR971840.1|DR971840
EST:     TAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: TAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211541447|gb|FL362041.1|FL362041
EST:     AGGTCTACGAGCTCTTGGATTCAT-GGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTA
EST: gi|89248079|gb|DY619865.1|DY619865
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAA-CCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|149107564|gb|EE189447.2|EE189447
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|148981980|gb|EE028040.2|EE028040
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211080710|gb|FL326336.1|FL326336
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|71439594|gb|DR820644.1|DR820644
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211089234|gb|FL353067.1|FL353067
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTC-AAAACATTACTGATCCCATCTCTAGATTTGGAAA-CCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211425297|gb|FL350056.1|FL350056
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAA
EST: gi|211211312|gb|FL358293.1|FL358293
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCA
EST: gi|76937482|gb|DV175165.1|DV175165
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|149074196|gb|EE162559.2|EE162559
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAA-CCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|76286893|gb|DV026461.1|DV026461
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|9731165|gb|BE509917.1|BE509917
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|84976699|gb|DW475121.1|DW475121
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211040997|gb|FL343134.1|FL343134
EST:     AGGTCTACGAGCTCTTGGATTCATTGCAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCGATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|71429467|gb|DR810517.1|DR810517
EST:     GGTCTACGAGCTCTTGGATTCA-TGAGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: GGTCTACGAGCTCTTGGATTCATTG-GAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|211457939|gb|FL348745.1|FL348745
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTC-AAAACATTACTGA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGA
EST: gi|50331370|gb|CO526496.1|CO526496
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|71429468|gb|DR810518.1|DR810518
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAA-CCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
EST: gi|91051936|gb|EB162354.1|EB162354
EST:     AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAG                         GCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA
genomic: AGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 154

GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 75

GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 95

GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 45

GTTACTGCATACTCAGATGGCCAAGTCAAGGTCTACGAGCTCTTGGATTCATTGGAATTAGACAAGTGGCAGCTTCAGgtttatctag ... attcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagatcatgtttatcaaaacaaactaataatttgattattcacattcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC
                                            cattctt  CT-rich tract
        atgtttatcaaaacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttatctagctactgttaaccattttcaaagttttaaattatgctgtttcagtttattcttgatttgcaaatcatttccaaagtcccttatgattcaatcttccataattagcataagatcatgtttatcaaaacaaactaataatttgattattcacattcttgtagGCAGAGTTCCAAAACATTACTGATCCAATCTCTAGATTTGGAAAACCTGCATGCACTTCTGCATCCATAGCATGGAATCCAAGAAGAGGTGGAAGCCAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
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