1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtgtaatcattacgacctgcatacaaaaacaaataacctgtggagccaattataacttctcacgtattggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTACTTGGCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACT
species | Zea mays |
transcript | GRMZM2G057408_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTAEST: gi|78118281|gb|DV536668.1|DV536668
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTAEST: gi|148956892|gb|EC902815.2|EC902815
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTNCA-GTAGCATGGAGAGTCCATCTGGTEST: gi|71428977|gb|DR810027.1|DR810027
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTT-CAAGTAGCATGGAGAGTCCATCTGGT
EST: TCCTGGGACAATACTCTTGGCTCA-CCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTAEST: gi|89757689|gb|DY687184.1|DY687184
genomic: TCCTGGGACAATACTCTTG-CTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCEST: gi|71441161|gb|DR822211.1|DR822211
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTC
EST: TCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTNCA-G GTGCAGCTGCAACAAATAACTGGTTCA-GTAGCATGGAGAGTCCATCTGGEST: gi|91876492|gb|EB406449.1|EB406449
genomic: TCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTT-CAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTG-TTCAAGTAGCATGGAGAGTCCATCTGG
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCCACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTAEST: gi|71763063|gb|DR961000.1|DR961000
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTAEST: gi|78118283|gb|DV536669.1|DV536669
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTAEST: gi|101392321|gb|EB818090.1|EB818090
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
EST: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAG GTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
genomic: TTCCTGGGACAATACTCTTGCTCAACCTTTCAGCGCTGGTCATGTTCAAGgtttgtgtaa ... ggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTA
caaaaacaaataacctgtggagccaattataacttctcacgtattggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTACTTGGCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACT
ttctcac putative branch site (score: 2)
aattataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtaatcattacgacctgcatacaaaaacaaataacctgtggagccaattataacttctcacgtattggtgatgcagGTGCAGCTGCAACAAATAACTGTTCAAGTAGCATGGAGAGTCCATCTGGTACTTGGCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA