1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cactgtgtttcttcttcaaagcatgtttgatgttccagcaacacgttagcttctgtcttattgatatcaacatttgatacctgtccccctttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
species | Zea mays |
transcript | GRMZM2G057329_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211023124|gb|FL428614.1|FL428614
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|19057931|gb|BM736598.1|BM736598
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|19058424|gb|BM737091.1|BM737091
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|32858929|gb|CD998610.1|CD998610
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACATTGGTANTAACTCTAATGGATCTCAGEST: gi|60349165|gb|DN216138.1|DN216138
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|60349812|gb|DN216785.1|DN216785
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|60394638|gb|DN227508.1|DN227508
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|24766439|gb|CA401593.1|CA401593
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211360429|gb|FL377716.1|FL377716
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GGCAA-CAGTGGGATTAACTCTAATGGATCTCAGEST: gi|211357849|gb|FL385252.1|FL385252
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagG-CAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGSTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|87152302|gb|DY397091.1|DY397091
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|32925862|gb|CF030674.1|CF030674
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211438423|gb|FL465204.1|FL465204
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211073855|gb|FL392646.1|FL392646
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATTATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211027097|gb|FL381991.1|FL381991
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211099687|gb|FL379428.1|FL379428
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|22490292|gb|BU050215.1|BU050215
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211206179|gb|FL469079.1|FL469079
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|32933536|gb|CF038348.1|CF038348
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAAGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGGTCTCAGEST: gi|6695399|gb|AW288507.1|AW288507
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|32926451|gb|CF031263.1|CF031263
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|32940102|gb|CF044921.1|CF044921
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|8577336|gb|BE129973.1|BE129973
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211433999|gb|FL392548.1|FL392548
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|12047274|gb|BF729413.1|BF729413
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211254561|gb|FL409666.1|FL409666
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATEST: gi|78179385|gb|DV549758.1|DV549758
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAAT
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|60398036|gb|DN230852.1|DN230852
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|113800830|gb|DW922816.1|DW922816
genomic: ATGATGAAAATTTTATAGCAAAGCATACAGGGCCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: CTGCTCTCGATG GCAAACAGTGGAATTAACTCTAATGGATCTCAGEST: gi|211042680|gb|FL406379.1|FL406379
genomic: CTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
EST: TGATGAAAATTTTATAGCAAAGCATACAGGGNCCTGGACTGCTCTCGATG GCAAACAGTGGAANTTAACTCTAATGGATCTCAG
genomic: TGATGAAAATTTTATAGCAAAGCATACAGGG-CCTGGACTGCTCTCGATGgtactctttt ... ttttttccagGCAAACAGTGGAA-TTAACTCTAATGGATCTCAG
ttagcttctgtcttattgatatcaacatttgatacctgtccccctttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
tacctgtccccctttt CT-rich tract
ttattgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgtgtttcttcttcaaagcatgtttgatgttccagcaacacgttagcttctgtcttattgatatcaacatttgatacctgtccccctttttttccagGCAAACAGTGGAATTAACTCTAATGGATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - -tgtttct
- - - - - - - - - aagcatg
- - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - -cagcaac
- - - - - - - - - - - - - - - - - - - - - - - - gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca