Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcactgagccactttcctcctttctgtttcatattctcttgctactggatgcatttcctctcaatttgtcatatggtgtaacttgtctttggcaataaaattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG

Basic information

species Zea mays
transcript GRMZM2G057251_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g48020.1 (Oryza sativa), 3'ss of exon 4
-------gtaaattcactgagc-cactttcctcctttctgtttcatattctcttgctactggatgcatttcctctcaatttgtcatatggtgtaacttgtctttggcaataaaattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
        | ||||| | || | | |||| || | ||    ||||| ||    | || ||||| |            |||| | || |   || || ||| | ||| | | ||||| |||||||||||||||||||  |||| |||||||| ||||||||| |||||||||||||||||||||||||||||
gtaatatattaattccccgaacacgcttttcttcctt----ttcatttttggctactgctggaagtgg--------gatttcttatgtaaggtgacctgtgtatggaattgaaattctgcagGATGAAGGTTTGGATATTATCGGTGAAGGGCTGGAAACTCTGAAAAACATGGCATCTGATATGAATGAG

upper sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G36410.2 (Glycine max), 3'ss of exon 4
-------------------------------gtaaattcactgagccactttcctcctttctgtttcatattctcttgc-tac-tggatgcatttcctctca-atttgt-catatggtgtaacttgtctttggca---------ataaaattgtgc-----------agGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
                               |  | ||   |    |   ||   | |      | ||||    | | | ||| | |||  ||     |  | || | |  ||||| || |  ||||  | | ||         ||  |||| ||            ||||| ||||||||||  | ||||  |||||| |||| ||||||||||||||||||  |||||||||||||
gtaacttttagcagttgcgaccagaaagactgacagttttttctatcgtcttttgcatgatatatacatacgtacatacatacatagatatatacatacatacatatatatatatgttgaatgttgttctagacatggtttcaaatctaattatgtggaccatttttaggatcaagGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG

upper sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G36410.1 (Glycine max), 3'ss of exon 4
-----------------------------------gtaaattcactgagccactttcctcctttctgtttcatattctcttgc-tac-tggatgcatttcctctca-atttgt-catatggtgtaacttgtctttggca---------ataaaattgtgc-----------agGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
                                   |  | ||   |    |   ||   | |      | ||||    | | | ||| | |||  ||     |  | || | |  ||||| || |  ||||  | | ||         ||  |||| ||            ||||| ||||||||||  | ||||  |||||| |||| ||||||||||||||||||  |||||||||||||
gcaagtaacttttagcagttgcgaccagaaagactgacagttttttctatcgtcttttgcatgatatatacatacgtacatacatacatagatatatacatacatacatatatatatatgttgaatgttgttctagacatggtttcaaatctaattatgtggaccatttttagGATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG

upper sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G33680.1 (Glycine max), 3'ss of exon 4
------------------------gtaaattcactgagccactttcctcctttctgtttcatattctcttgctac-tggatgcatttcctctcaatttgtcatatggtgtaacttgtctttggcaataaaattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
                          | |   |||||     ||| ||    ||| || |||  | | |   ||  |  ||   ||   | |   | |   | ||||| | |  | |  ||   |  ||   | |  ||||| ||||||||||  | || |  |||||| |||| ||||||||||||||||||  |||||||||||||
gcaagtaacttttagcagttgcaaccagaaagactgacagtttttgctatcatcttttgcatgatgtgtatatatatatatatgttgaatgttgttctag-acatggtttcaaatctaatta-tatgaaccatctttagGATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAG

upper sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G05870.1 (Glycine max), 3'ss of exon 5
--------------gtaaattc-actgagccactttcctcctttctgtttcatattctcttgctactggatgcatttcctctcaatttgtcatatggtgtaacttgtctttggcaataaaattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
              | |  | | | ||     |  |  || |||   ||   | ||   |   || ||||||  | |||    |||   |||  |  |  ||  |  |||    || | |||| |  ||||| |||||||||| || |||| ||||||| |||| || |||||||||||||||  |||||||||||||
gcaagtaacttaaagcagttgcgagtggtttgccgttatcttttagcttaggtttttgttgattattggatgtctctccaggaaatggttcacctt-tcaaatctaactt----aacataattttttagGATCAAGGTTTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAACATGGCACATGATATGAATGAG

upper sequence: GRMZM2G057251_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G20220.1 (Glycine max), 3'ss of exon 4
--------------gtaaat-tcactgagccactttcctcctttctgtttcatattctcttgctactggatgcatttcctctcaatttgtcatatggtgtaacttgtctttggcaataaaattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
              | |  | ||| ||     || |  || |||   ||   | |   ||   || ||||||  |  |  |   | | ||   |   |  ||  |  ||      |   |||| |  ||||  |||| ||||| || |||| ||||||| |||| || |||||||| ||||||  |||||||||||||
gcatgtaacttaaagcagttgtcagtggtttgctgttatcttttagcttaggtttatgctgattattggatg--tcactccaggaatggttcaactttcaaatctaactac----acgtaattttttagGACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATGGCACATGATATGAATGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082805|gb|DV511198.1|DV511198
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|74237329|gb|DT645243.1|DT645243
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|60400857|gb|DN233664.1|DN233664
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|71770367|gb|DR968304.1|DR968304
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|76936954|gb|DV174978.1|DV174978
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAAGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|60338253|gb|DN205226.1|DN205226
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|78076770|gb|DV505204.1|DV505204
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|76018601|gb|DT945771.1|DT945771
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|78074902|gb|DV503336.1|DV503336
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|91869751|gb|EB400522.1|EB400522
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|78076771|gb|DV505205.1|DV505205
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|60397948|gb|DN230764.1|DN230764
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|149088922|gb|EE178063.2|EE178063
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|211444699|gb|FL108662.1|FL108662
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|60400044|gb|DN232851.1|DN232851
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|74237328|gb|DT645242.1|DT645242
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|71299507|gb|DR785763.1|DR785763
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|76018600|gb|DT945770.1|DT945770
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|211515335|gb|FL131678.1|FL131678
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGNNAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|78082804|gb|DV511197.1|DV511197
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|67038186|gb|CO464516.1|CO464516
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAA-CAG                         GATGAAGGTTTGGGACGT-ATTGGTGAAGGACTGGAAACTTTGAAAA-CAT
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGG-ACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACAT
EST: gi|32857817|gb|CD997498.1|CD997498
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|32830724|gb|CD970402.1|CD970402
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|78086622|gb|DV515015.1|DV515015
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|74235878|gb|DT643792.1|DT643792
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|148932647|gb|EC876561.2|EC876561
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|15313737|gb|BI478932.1|BI478932
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGA
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGA
EST: gi|76281470|gb|DV021038.1|DV021038
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|149015005|gb|EE044748.2|EE044748
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|149070317|gb|EE158717.2|EE158717
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG
EST: gi|5608427|gb|AI902004.1|AI902004
EST:     AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAG                         GATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAACCATG
genomic: AAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 382

ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 481

ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 425

ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 413

ATGGAAACTTTGATGATGAGTACTTTAAGGGGACAGAAGAATCTAATCAGTTCCGTCGGGAATATGAGATGCGCAGAATGAAACAGgtaaattcac ... aattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcctctcaatttgtcatatggtgtaacttgtctttggcaataaaattgtgcagGATGAAGGTTTGGACGTTATTGGTGAAGGACTGGAAACTTTGAAAAACATGGCATCTGATATGAATGAG
                      gtgtaac  putative branch site (score: 413)
                                        aataaaattgt  TA-rich tract