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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcaatcatactgctctagcttcatatgcatcaaaaatactaaatgtttctctcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA

Basic information

species Zea mays
transcript GRMZM2G057158_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057158_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g03920.1 (Oryza sativa), 3'ss of exon 4
gtga-tcaatcatactgctctagcttcatatgcatcaaaaatacta-aatgtttctctcttttgca--gCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA
|| | | | | |||||||| |||  | ||    |||| |     ||  ||| || | |  | || |  ||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| | 
gtaaattagttatactgctgtagtgt-atggaaatcagatggcttatgatgatttttttgtgtgtatagCAATTAATCTCATTCCAGCAGTCCTTGATGTCACAACTTGGTCAACAACAAGCTGGCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558010|gb|CA830245.1|CA830245
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: gi|21828621|gb|BQ703305.1|BQ703305
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: gi|67027074|gb|CO455823.1|CO455823
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: gi|87156460|gb|DY401249.1|DY401249
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: gi|113704257|gb|EE681761.1|EE681761
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         CAATTAATTTCATTCCAGCAGTCTTTGATGTCACATCTTGGCCAACAACAA
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
EST: gi|67022731|gb|CO451480.1|CO451480
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         N
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcag-
EST: gi|67022731|gb|CO451480.1|CO451480
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         N
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcag-
EST: gi|60340529|gb|DN207502.1|DN207502
EST:     TTCAGAATCCAGAATTTCTTCGCCAGTTGACGTCTCCTGAAACATTGCAG                         CAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA
genomic: TTCAGAATCCAGAATTTATTCGCCAGTTGACGTCTCCTGAAACATTGCAGgtgatcaatc ... tcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactgctctagcttcatatgcatcaaaaatactaaatgtttctctcttttgcagCAATTAATTTCATTCCAGCAGTCTTTGATGTCACAACTTGGCCAACAACAAACTGGACA
                              tactaaa  putative branch site (score: 1)
                                     tgtttctctcttttgc  CT-rich tract
                         aaaaatactaaatgtt  TA-rich tract