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gtaagataccttggatatgttaatattaaatttgccaaatagatgtctaaattcctttcactttactgtgagcagGTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAG
species | Zea mays |
transcript | GRMZM2G057084_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAATATGTCCACTTGGGAAAGATTGGTTCTGGAAGCTACGGAAAAGTG GTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAGEST: gi|76015161|gb|DT942331.1|DT942331
genomic: ATCAATATGTCCACTTGGGAAAGATTGGTTCTGGAAGCTACGGAAAAGTGgtaagatacc ... ctgtgagcagGTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAG
EST: ATCAATATGTCCACTTGGGAAAGATTGGTTCTGGAAGCTACGGAAAAGTG GTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAG
genomic: ATCAATATGTCCACTTGGGAAAGATTGGTTCTGGAAGCTACGGAAAAGTGgtaagatacc ... ctgtgagcagGTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAG
taatattaaatttgccaaatagatgtctaaattcctttcactttactgtgagcagGTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAG
gtctaaa putative branch site (score: 3)
ttcctttcactttact CT-rich tract
ttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataccttggatatgttaatattaaatttgccaaatagatgtctaaattcctttcactttactgtgagcagGTTCTGTACAGAAACATTAAAGATGGGAAGTTGTATGCCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG