1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctactgctaagctaggagttgattctacggctgatatttcaacattggtgacaccgtttaaccactttcctaacttgatgcattctgcttctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG
species | Zea mays |
transcript | GRMZM2G056572_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|76917080|gb|DV166669.1|DV166669
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|5846990|gb|AW000069.1|AW000069
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|76288715|gb|DV028283.1|DV028283
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|60351289|gb|DN218262.1|DN218262
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|31406344|gb|CD485076.1|CD485076
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCEST: gi|101386844|gb|EB815439.1|EB815439
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|211062962|gb|FL387714.1|FL387714
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGG-AGCEST: gi|149106821|gb|EE188718.2|EE188718
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|71448387|gb|DR829437.1|DR829437
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|18660188|gb|BM500731.1|BM500731
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|5296366|gb|AI783136.1|AI783136
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|91051774|gb|EB162192.1|EB162192
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAAGG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|149111016|gb|EE294515.2|EE294515
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|74237808|gb|DT645722.1|DT645722
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|211187859|gb|FL425729.1|FL425729
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|60394530|gb|DN227400.1|DN227400
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|22133680|gb|BQ833845.1|BQ833845
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|61118718|gb|DN559679.1|DN559679
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|211113689|gb|FL397728.1|FL397728
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: GTCGCAAATGTTGGTGACTCTAGGGCTATCATATTGCAGGGAAGGAAATG GEST: gi|211113689|gb|FL397728.1|FL397728
genomic: GTCGCAAATGTTGGTGACTCTAGGGCTATCATAT-GCAGGGAAGGAAATGgtaccaaggc ... ctttttgcag-
EST: GTCGCAAATGTTGGTGACTCTAGGGCTATCATATTGCAGGGAAGGAAATG GEST: gi|211209068|gb|FL368391.1|FL368391
genomic: GTCGCAAATGTTGGTGACTCTAGGGCTATCATAT-GCAGGGAAGGAAATGgtaccaaggc ... ctttttgcag-
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATGGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGEST: gi|50323711|gb|CO518837.1|CO518837
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATG
EST: CGTCGCAA-TGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCEST: gi|76931265|gb|DV172687.1|DV172687
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
EST: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATG CTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
genomic: CGTCGCAAATGTTGGTGACTCTAGGGCTATCATATGCAGGGAAGGAAATGgtaccaaggc ... ctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGC
tggtgacaccgtttaaccactttcctaacttgatgcattctgcttctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG
cattctgcttcttttt CT-rich tract
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactgctaagctaggagttgattctacggctgatatttcaacattggtgacaccgtttaaccactttcctaacttgatgcattctgcttctttttgcagCTATTGCTGTTTCAAAGGATCACAAGCCTGATCAAACTGATGAGCGGCAGCGTATTGAAGATGCTGGAGGTTTTGTGATGTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG