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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggtttcaggaaatgtgtgatattgataaattggtgacatgttagttcttaacttttctaaattgctgtcatgctgcttgatgttatattctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG

Basic information

species Zea mays
transcript GRMZM2G056393_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056393_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 3'ss of exon 4
caggtttca-ggaaatgtgtgatattgataaattggtgacat-gttagttcttaacttttctaa-attgctgtcatgctgcttgatgttatattctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG
    |  || |||  |||   |||| ||| | ||  |||  | || | |  ||||||||| |   | |  |||| || |     || ||  ||| || | ||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
ttactgacatggatttgtagaatatcgattactttatgatttagtcattaattaacttttgtgctacttttgtcttgatatc--atatttcatt-ttgaccagGCAGCTATTCGAAGAGCAACAGTAGCACGCAAGTTTATACCAGTTTACATGGGAAGTGCATTCAAAAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491486|gb|BU051409.1|BU051409
EST:     TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
EST: gi|67019503|gb|CO448252.1|CO448252
EST:     TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACGGAGGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
EST: gi|19436218|gb|BM952628.1|BM952628
EST:     TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
EST: gi|19351127|gb|BM895659.1|BM895659
EST:     ATGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
EST: gi|32931849|gb|CF036661.1|CF036661
EST:     TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACAGAAGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
EST: gi|87154041|gb|DY398830.1|DY398830
EST:     TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
EST: gi|118406757|gb|EH038205.1|EH038205
EST:     TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAG                         GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG
genomic: TTGCTGAAGCTTTTCTCAATGATGAGCCAATAACAGCTAATCAGCTTAAGgtttgttaaa ... tctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttaacttttctaaattgctgtcatgctgcttgatgttatattctttatcagGCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAG
                                            ttctttatc  CT-rich tract
                                    atgttatattctttat  TA-rich tract