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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcggtaacgcatactgagttttgtgtgaatttagttacacaataattacttaatgttaatgatacagACTGAATAAAAGTTGTCTGGCTTTCCAGTCCCTTACTGAGAAGCAAGCAAAGGAAAGGCGGGAATCAAGGGGGGGTCGCAATGCTTTCCTAGACAATCTT

Basic information

species Zea mays
transcript GRMZM2G055520_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055520_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g06070.1 (Oryza sativa), 3'ss of exon 4
gtaagtcggtaacgcatactgagttttgtgtgaatttagttacacaataattacttaatgttaatgatacagACTGAATAAAAGTTGTCTGGCTTTCCAGTCCCTTACTGAGAAGCAAGCAAAGGAAAGGCGGGAATCAAGGGGGGGTCGCAATGCTTTCCTAGACAATCTT--------
        |||| ||  ||  |   || |||  ||||||||||| |     | ||  || |   | ||||| | |  ||||   | ||  |   ||||||||| ||||||| |||||||| ||||||||||| |||||||||| ||| || ||| ||||| | || ||| ||        
--------gtaatgccaacc-atccttctgtagatttagttacagaggttctgctggat-tactttatacatattatataagcttggttggctattccagTCCATTACTGAAAAGCAAGCGAAGGAAAGGCGAGAATCAAGGGAGGGCCGAAATACTTTCTTGGAAAATATTAATGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgagttttgtgtgaatttagttacacaataattacttaatgttaatgatacagACTGAATAAAAGTTGTCTGGCTTTCCAGTCCCTTACTGAGAAGCAAGCAAAGGAAAGGCGGGAATCAAGGGGGGGTCGCAATGCTTTCCTAGACAATCTT
                                         tgttaat  putative branch site (score: 3)
               aatttagttacacaat  TA-rich tract