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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgccattccatatagaatttgaatctattaccagtggattaattatactgtagatgttatcaggatgtcatgattttagtaaacttctcctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACACAAATGTATTTCTCGAATCCATCATTGTACGCCTGATGATGAAAAACCAA

Basic information

species Zea mays
transcript GRMZM2G055458_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055458_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g25440.1 (Oryza sativa), 3'ss of exon 4
atgcca--ttccatatagaatttgaatctattaccagtggattaattatactgtagatgttatcaggatgtcatgattttagtaaacttctcctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACACAAATGTATTTCTCGAATCCATCATTGTACGCCTGATGATGAAAAACCAA
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gtcccgggcgccttgcatattttctgctctgtttctctgagttgtaaacatgatcaggaac-tcaggatatcattgttttgctgaattgcactc-tatgcagGGATCTAAAATTTCTGATAAATCACATAACCAAGAGACAACAGATTTGCACAAGTGTATTTCTCGGATCCATCGTTGTACACCTGATCATGAAAAAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440580|gb|DR821630.1|DR821630
EST:     GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG                         GGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
genomic: GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAGgttcttttat ... ctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
EST: gi|50337459|gb|CO532585.1|CO532585
EST:     GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG                         GGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACA
genomic: GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAGgttcttttat ... ctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACA
EST: gi|211049191|gb|FL204538.1|FL204538
EST:     GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG                         GGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
genomic: GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAGgttcttttat ... ctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
EST: gi|211049189|gb|FL204536.1|FL204536
EST:     GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG                         GGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
genomic: GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAGgttcttttat ... ctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
EST: gi|101387490|gb|EB815760.1|EB815760
EST:     GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG                         GGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
genomic: GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAGgttcttttat ... ctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
EST: gi|211049192|gb|FL204539.1|FL204539
EST:     GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAG                         GGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC
genomic: GGGACATGGATTCTATAAGACCTGAAGTAAAACTGTTCTACTCTAGTCAGgttcttttat ... ctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactgtagatgttatcaggatgtcatgattttagtaaacttctcctattttcagGGATCCAAAATTTCTGATAAGTCACATAACCAGGAGACAACAGATCTACACAAATGTATTTCTCGAATCCATCATTGTACGCCTGATGATGAAAAACCAA
                                       cttctcctattttc  CT-rich tract
                         atgattttagtaaa  TA-rich tract