1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagaatgtgcacagggaactaggttaatcctaggattgcaaaagataaatagttttagccgattttcctttattttacaattctgcgtgcaatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGTGTGTTACCAAAAGTTTCTCCCTCATGGCAAGAATTTTCACCCTCTGAAG
species | Zea mays |
transcript | GRMZM2G054470_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT AGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGTEST: gi|32934660|gb|CF039472.1|CF039472
genomic: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAATgtatgttact ... aatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGT
EST: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT AGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGTEST: gi|71318738|gb|DR796124.1|DR796124
genomic: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAATgtatgttact ... aatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGT
EST: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT AGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGTEST: gi|32934536|gb|CF039348.1|CF039348
genomic: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAATgtatgttact ... aatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGT
EST: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAAT AGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGT
genomic: AGATTTATGAAAGCAATTGAAGCTGTGGCTAGAGACTCAAGCAGTGTAATgtatgttact ... aatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGT
taaatagttttagccgattttcctttattttacaattctgcgtgcaatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGTGTGTTACCAAAAGTTTCTCCCTCATGGCAAGAATTTTCACCCTCTGAAG
attttcctttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaatgtgcacagggaactaggttaatcctaggattgcaaaagataaatagttttagccgattttcctttattttacaattctgcgtgcaatgttacagAGGCATGGCAAATTTCATAGCACAACAAATAGAAGATCTAGGTGCAGAAGTGTGTTACCAAAAGTTTCTCCCTCATGGCAAGAATTTTCACCCTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG