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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactctgcttgttatacgctggatgggtttcttgacaatgagccacagttttctgaagttttcgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC

Basic information

species Zea mays
transcript GRMZM2G054136_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 5
-----tactctgcttgttatacgctggatgggtttcttgacaatgagccacagttttctga-agttttcgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
     || | |  |   |  | | | |   | ||||  | |||      | |  || | |  || ||||     ||  | | ||||   || |  ||   | |||||||||||||| |||||||| ||||||||||| || |||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||  |
caccatattatattgtctgcatgtttgtcagttttcaagtcaaaa---tatatcttccaggtagctttctgcttac--ctacctaatg-gtgttgttgtgttgcagGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGC

upper sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 5
tactctgcttgttatacgctggat----gggtttcttgacaatgagccacagttttctgaagttttcgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
          || | || ||| |     |   |  | |    |||  |||| ||     |   | |      | |      |   |||| ||  |  ||| |||||||| | || ||||| || |||||||||||  |||||||||| || ||||| || ||||||||| | |||||||| ||||||||||||||||  ||  |
----------gtgagacactgaacttgagaaatagtggtttctgaatcacacttgagaaataatgttttctgaaacttgtttcttctgtttggatttttgacagGCAAGGAAGTTAGCAAAGCCCCTAAGATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAAAATTGC

upper sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 3'ss of exon 5
tactctgcttgttatacgctggatgggtttcttgacaatgagccacagttttctgaagtttt--cgaaccacaacaagctaacctgt-atgtttccttg-gcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
             |   |   ||    |   || ||    ||  | | ||       ||||   |||   |  |    ||||  | | | | |||| || |||||||||||||| |||||||| |||||||||||  |||||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||  |
----acaaacaagaagggtaagaaaattagattcacttaaagagataattgaaaactgtttatacgattgatgatttactaatatatgaggcttccatgtgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGC

upper sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 5
tactctgcttgttatacgctggatgggtttcttgacaatgagccacagttttctgaagttttcgaaccacaacaagctaacctgt-atgtttccttg-gcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
              || |     | | ||   | | ||      |  |    |||   | | |||   |  |    ||||  | | | | |||| || |||||||||||||| |||||||| |||||||||||  |||||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||  |
-------------gtaagaaaattagattcactta-aagagataattgaaaactgtt-tatacgattgatgatttactaatatatgaggcttccatgtgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGC

upper sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 4
lower sequence: PP1S3195_1V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------tactctgcttgttatacgctggatgggtttcttgacaatgagccacagtttt----ctgaagt-----tttcgaaccacaacaagctaac--ctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
                |  | ||  |||  ||   | |    | ||| |  |    || | | | | |    | |  |      || |||    |      || ||  |||  ||  | |||  |||||||||||   ||||||||||| ||||||||  |||||||||| || |||||  | |||||||||||   |||| | ||   |||||||  | |  |  |
gtacagtcatggctcctgatgtgggtgtcgtat-tttgccatgcttcctttcgtgcagtcgccgatgtagagcgggggccattgttgcgaggagccctctactgacgtctgcgtgcgtgcttt-cagGCAAGAAGAGGAGCAAGGCACCGAAGATCCAGAGGCTTGTGACTCCTTTGACTTTGCAGAGGAAGCGCCGTAGAGTGGCAATCAAGAAGGCGCGTGTCGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32847444|gb|CD987125.1|CD987125
EST:     ACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: ACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211227435|gb|FL027879.1|FL027879
EST:     TACGCAAGTACGTGAACACATACCGCAGGATTTTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149082757|gb|EE171979.2|EE171979
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTTCCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|22818832|gb|BU498922.1|BU498922
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|88757787|gb|DY541928.1|DY541928
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211476406|gb|FL048975.1|FL048975
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211502177|gb|FK949336.1|FK949336
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31664583|gb|CD573516.1|CD573516
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|110517730|gb|EE022317.1|EE022317
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211511625|gb|FK949394.1|FK949394
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211304461|gb|FL467465.1|FL467465
EST:     GTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAAGAACG                         GCAAGAAGKTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTG
genomic: GTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACC-AAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTG
EST: gi|31664073|gb|CD573253.1|CD573253
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|148942260|gb|EC887276.2|EC887276
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211108259|gb|FL149503.1|FL149503
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|94472505|gb|EB701463.1|EB701463
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|109179375|gb|EC379954.1|EC379954
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|94478280|gb|EB707238.1|EB707238
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149075315|gb|EE163821.2|EE163821
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149080655|gb|EE169710.2|EE169710
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|33094933|gb|CF054927.1|CF054927
EST:     ACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCGGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: ACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|211405272|gb|FL480449.1|FL480449
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|113647481|gb|DW805189.1|DW805189
EST:     GTACGCAAGTACGTGAACACATACCGCAGGACATTTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCC
genomic: GTACGCAAGTACGTGAACACATACCGCAGGACATT-CACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCC
EST: gi|166449160|gb|EG322722.1|EG322722
EST:     TGTACGCAAGTATGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACGCCCTTG
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTG
EST: gi|88754131|gb|DY538272.1|DY538272
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149082123|gb|EE171303.2|EE171303
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTTCCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|149103990|gb|EE289414.2|EE289414
EST:     TGTACGCAAGTACGTGAACACATCCCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|31998026|gb|CD661882.1|CD661882
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCGCTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|94478279|gb|EB707237.1|EB707237
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|47961738|gb|CN844447.1|CN844447
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|213178395|gb|FM183669.1|FM183669
EST:     GAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
genomic: GAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGA
EST: gi|29577181|gb|CB617293.1|CB617293
EST:     TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACG                         GCAAGAAGGTCAGCAAGGCACCTAA
genomic: TGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1779

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1549

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1756

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 920

AAGAGGGCCTCCAAGATCAGAAAGCTGTTCAACCTTAACAAGGATGATGATGTACGCAAGTACGTGAACACATACCGCAGGACATTCACTACCAAGAACGgtgagcttcc ... tccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttttctgaagttttcgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC
                             agctaac  putative branch site (score: 920)
                                         tgtttcctt  putative PPT
          aagtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tactctgcttgttatacgctggatgggtttcttgacaatgagccacagttttctgaagttttcgaaccacaacaagctaacctgtatgtttccttggcagGCAAGAAGGTCAGCAAGGCACCTAAGATCCAACGGCTTGTGACACCCTTGACCCTCCAGAGGAAGCGTGCTAGAATCGCTGACAAGAAGAAGAGGATAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - -tgcttgt
- - - - - - - - - ctggatg
- - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtatg