1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactcaccagtcacgcaggctggatcacgccgcgcgccttgcttatgccatgaagaagtttgttctgacataacagtgtacgtgtgcgcgcgtgcgccgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCAAGTCGGCGTCCGGGAAGATCCTGAGGAGGGAGCTGCGCGCCAAGCTCG
species | Zea mays |
transcript | GRMZM2G054013_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|50334551|gb|CO529677.1|CO529677
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATTTCCAAGCAG GTGGTATTTTACAAGAGGCTACCCAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|18179985|gb|BM381195.1|BM381195
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|37421492|gb|CF648446.1|CF648446
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|149084174|gb|EE173585.2|EE173585
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|94474516|gb|EB703474.1|EB703474
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GGGGTATTTTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCEST: gi|91048670|gb|EB159088.1|EB159088
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
EST: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAG GTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
genomic: CCGACGCCGACATCGCGGAGGACGCCATCAAGGAGTTCATCTCCAAGCAGgtactcacca ... cgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCC
aagaagtttgttctgacataacagtgtacgtgtgcgcgcgtgcgccgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCAAGTCGGCGTCCGGGAAGATCCTGAGGAGGGAGCTGCGCGCCAAGCTCG
ttttc CT-rich tract
attttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcaccagtcacgcaggctggatcacgccgcgcgccttgcttatgccatgaagaagtttgttctgacataacagtgtacgtgtgcgcgcgtgcgccgattttcagGTGGTATTCTACAAGAGGCTACACAAGGTGTACTTCACCCCCTCCATCCCCAAGTCGGCGTCCGGGAAGATCCTGAGGAGGGAGCTGCGCGCCAAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT