1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatgccatatcttggagcactactttgttcaccattggccaattaggtttgtgtcatattgacactaaggtgccaacattctctcccatgtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGACAAGTCCAGTGATGAAGAGCTTAGCGAGGAGGAAGACGACTCCGGTGA
species | Zea mays |
transcript | GRMZM2G053764_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|60396538|gb|DN229407.1|DN229407
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|1337735|gb|W49441.1|W49441
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGEST: gi|5608383|gb|AI901960.1|AI901960
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAGEST: gi|113551844|gb|DW724990.1|DW724990
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
EST: GCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAAG AATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGEST: gi|87156694|gb|DY401483.1|DY401483
genomic: GCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAA-Ggtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGG
EST: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACTCCGGAAG
genomic: TGCAGCACTGATGATGCGTGATCGTCCTGTTTATGAACAGAAAGTGAAAGgtacagtggt ... gtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAG
aggtttgtgtcatattgacactaaggtgccaacattctctcccatgtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGACAAGTCCAGTGATGAAGAGCTTAGCGAGGAGGAAGACGACTCCGGTGA
tattgac putative branch site (score: 2)
ttctctcccatgtttc putative PPT
tcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgccatatcttggagcactactttgttcaccattggccaattaggtttgtgtcatattgacactaaggtgccaacattctctcccatgtttctgcagAATATTGTGAGAAGTATGCCAAACCAGAGGACGCTGGTATCACTCCGGAAGACAAGTCCAGTGATGAAGAGCTTAGCGAGGAGGAAGACGACTCCGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA