1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagatactctcttctcttccattgatgctatgagctcttatcttatataatctataatctgagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
species | Zea mays |
transcript | GRMZM2G053764_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|12968800|gb|BG265836.1|BG265836
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5895766|gb|AW037012.1|AW037012
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|6022600|gb|AW067412.1|AW067412
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5713918|gb|AI943903.1|AI943903
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: GGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGNAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|32859162|gb|CD998843.1|CD998843
genomic: GGCTCTGTATGTTTAGATGTCATAAACCAAACATGG-AGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5895785|gb|AW037031.1|AW037031
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|60396538|gb|DN229407.1|DN229407
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|60355446|gb|DN222419.1|DN222419
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5649980|gb|AI920340.1|AI920340
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|1337735|gb|W49441.1|W49441
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|32859414|gb|CD999095.1|CD999095
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|71328419|gb|DR800850.1|DR800850
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5608383|gb|AI901960.1|AI901960
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|87156694|gb|DY401483.1|DY401483
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|211174889|gb|FL306344.1|FL306344
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTTTTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5895786|gb|AW037032.1|AW037032
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|5917370|gb|AW054161.1|AW054161
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|22715330|gb|BU197707.1|BU197707
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTCTGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|211174894|gb|FL306349.1|FL306349
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAEST: gi|211363205|gb|FL271919.1|FL271919
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST: TGGCTCTGTATGTTTANATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGGTTTTGAAGNATTCCTTCCACAGCTGTTACTATATCCAA
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
atcttatataatctataatctgagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
tctttttccacattcc CT-rich tract
atataatctataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatactctcttctcttccattgatgctatgagctcttatcttatataatctataatctgagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG