1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattccttctattatcatcaattctattgtttcatactatctgttctgcttgatgtagtctatataacacctttctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTTATGAG
species | Zea mays |
transcript | GRMZM2G053531_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|84969850|gb|DW468264.1|DW468264
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGATGGCAGCTATTCGTAATGTCCACACT GCACGCCCGCCCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|211437854|gb|FL220477.1|FL220477
genomic: TGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|78109883|gb|DV528299.1|DV528299
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|60341680|gb|DN208653.1|DN208653
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|113702906|gb|EE680410.1|EE680410
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|60394174|gb|DN227044.1|DN227044
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|6227143|gb|AW155672.1|AW155672
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTAATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|76926083|gb|DV170714.1|DV170714
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|93281145|gb|EB673409.1|EB673409
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|78021679|gb|DV490066.1|DV490066
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTAATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTEST: gi|93016890|gb|EB642410.1|EB642410
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
EST: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATT GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
genomic: TGGAGATGCCAAGCGTTCTTCTGATGGCAGCTATTCGTAATGTCCACATTgtaattcctt ... tctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGT
gtttcatactatctgttctgcttgatgtagtctatataacacctttctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTTATGAG
atataac putative branch site (score: 177)
cctttctgtt CT-rich tract
tctatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattccttctattatcatcaattctattgtttcatactatctgttctgcttgatgtagtctatataacacctttctgttatagGCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA