1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cattgcatcttcagattgtgatagcatcttttatgacagcatgcatatatatgtgtttgatctggttgcaaatatactaacttttttttatctcccacagTGTGCCCTACGACCCTCAAAAGAATTTGCAGGCAGCATGGTATAACCCGCTGGCCATCGCGAAAGATCAAGAAGGTAGACCACTCTCTAAGAAAGCTTCA
species | Zea mays |
transcript | GRMZM2G053298_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tatatatgtgtttgatctggttgcaaatatactaacttttttttatctcccacagTGTGCCCTACGACCCTCAAAAGAATTTGCAGGCAGCATGGTATAACCCGCTGGCCATCGCGAAAGATCAAGAAGGTAGACCACTCTCTAAGAAAGCTTCA
tactaac putative branch site (score: 4)
cttttttttatctccc CT-rich tract
aaatatactaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgcatcttcagattgtgatagcatcttttatgacagcatgcatatatatgtgtttgatctggttgcaaatatactaacttttttttatctcccacagTGTGCCCTACGACCCTCAAAAGAATTTGCAGGCAGCATGGTATAACCCGCTGGCCATCGCGAAAGATCAAGAAGGTAGACCACTCTCTAAGAAAGCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
cattgca
- - - - - - - - - - - - - - - - - - -agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc