1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aagtgttgaacttaagaataccctatttttaacaattgagtttaacatcccatcctatatgtgatttatcattttttgtgcatcatgtttgacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG
species | Zea mays |
transcript | GRMZM2G052926_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGAEST: gi|67014377|gb|CO443126.1|CO443126
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
EST: GCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGEST: gi|31358368|gb|CD442725.1|CD442725
genomic: GCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAA-Ggtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTG
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGAEST: gi|76013333|gb|DT940503.1|DT940503
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGAEST: gi|78087001|gb|DV515394.1|DV515394
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGAEST: gi|31250253|gb|CD219277.1|CD219277
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGAEST: gi|78080905|gb|DV509317.1|DV509317
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGAEST: gi|32943654|gb|CF048473.1|CF048473
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
EST: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAG GGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
genomic: GCTTCCGTGAGCGCGCTGCAATATTACACTTCTGTTCAACCTAGCATAAGgtaatgcagt ... gacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGA
catcccatcctatatgtgatttatcattttttgtgcatcatgtttgacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG
gtttgac putative branch site (score: 64)
tatatgtgatttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgttgaacttaagaataccctatttttaacaattgagtttaacatcccatcctatatgtgatttatcattttttgtgcatcatgtttgacattttagGGGAAGGAATGTATACATGCAGTTCTCATCTCACCAAGAGCTTACCACTGACCAGAGCTCTCATGGAAGGAATTCTGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tgttgaa
- - - - - - -aagaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatc