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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctgaattgagatataaaacaaactttgagttctgcttgcaatcatatgttgtaccttttgatttgatgctcttaaccatcataccatggtgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA

Basic information

species Zea mays
transcript GRMZM2G052880_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211376580|gb|FL160476.1|FL160476
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGGTCCTATCCGANATGGCAGGAAGAAGCCCTTTGTACNAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371250|gb|FL160440.1|FL160440
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373914|gb|FL160460.1|FL160460
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371256|gb|FL160446.1|FL160446
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CNTTGTCATGTTCCTATCCGACATGTCAGGGAAGAAGCCCTTTGTACAAGA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGG-AAGAAGCCCTTTGTACAAGA
EST: gi|211371258|gb|FL160448.1|FL160448
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211504197|gb|FL160497.1|FL160497
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373918|gb|FL160464.1|FL160464
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373920|gb|FL160466.1|FL160466
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|50336915|gb|CO532041.1|CO532041
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373917|gb|FL160463.1|FL160463
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CAATGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371251|gb|FL160441.1|FL160441
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGGTCATGTTCCTATCCGAAATGTCAGGAAGAAGCCCTTTGTACAAGA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTG-TCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGA
EST: gi|211501864|gb|FL160492.1|FL160492
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373908|gb|FL160454.1|FL160454
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376585|gb|FL160481.1|FL160481
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211501859|gb|FL160487.1|FL160487
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376576|gb|FL160472.1|FL160472
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376575|gb|FL160471.1|FL160471
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|76280654|gb|DV020222.1|DV020222
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211501861|gb|FL160489.1|FL160489
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373910|gb|FL160456.1|FL160456
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCNTGTTCCTATCCGACATGTCAGGAANAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376571|gb|FL160467.1|FL160467
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACANGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371255|gb|FL160445.1|FL160445
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAA
EST: gi|211501867|gb|FL160495.1|FL160495
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376582|gb|FL160478.1|FL160478
EST:     NCATTGNCTTCACTGGATGGCATATATTTCATCCAAC-AACTAAAGAGAA                         CATTGTCATGGTCCTATCCGAAATGTCAGGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAA
EST: gi|211501856|gb|FL160484.1|FL160484
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376572|gb|FL160468.1|FL160468
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211501854|gb|FL160482.1|FL160482
EST:     CCATTGNCTTCACTGGATGCCATATATTTCATTCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAANAAGCCCCTTTTGTACAAG
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCC-TTT-GTACAAG
EST: gi|211504199|gb|FL160499.1|FL160499
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371253|gb|FL160443.1|FL160443
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211501857|gb|FL160485.1|FL160485
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371261|gb|FL160451.1|FL160451
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376578|gb|FL160474.1|FL160474
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCC-TATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGA
EST: gi|211373907|gb|FL160453.1|FL160453
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211501860|gb|FL160488.1|FL160488
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373912|gb|FL160458.1|FL160458
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCNACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCCGACATGTCAGGAAGAAAGNCCTTTGTACAAG
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCC-GACATGTCAGGAAGAA-GCCCTTTGTACAAG
EST: gi|211501858|gb|FL160486.1|FL160486
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGGAAGAAGCCCTTTGTACAAGA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGG-AAGAAGCCCTTTGTACAAGA
EST: gi|211376583|gb|FL160479.1|FL160479
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|93015686|gb|EB641206.1|EB641206
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211501868|gb|FL160496.1|FL160496
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211371254|gb|FL160444.1|FL160444
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376577|gb|FL160473.1|FL160473
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211504198|gb|FL160498.1|FL160498
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211373915|gb|FL160461.1|FL160461
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCA
EST: gi|76294182|gb|DV033750.1|DV033750
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|74234513|gb|DT642427.1|DT642427
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376573|gb|FL160469.1|FL160469
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
EST: gi|211376584|gb|FL160480.1|FL160480
EST:     CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAA                         CATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
genomic: CCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 171

TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA


Block sizes: 43 (upstream exon), 46 (downstream exon)
Score: 166

TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 233

TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 184

TGGTCGAAGATTTATATAAACGGAGGCAACCATTGCCTTCACTGGATGCCATATATTTCATCCAACCAACTAAAGAGAAgtaagttatc ... tgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgtaccttttgatttgatgctcttaaccatcataccatggtgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA
                         tcttaac  putative branch site (score: 184)
           ttttgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctgaattgagatataaaacaaactttgagttctgcttgcaatcatatgttgtaccttttgatttgatgctcttaaccatcataccatggtgatttgcagCATTGTCATGTTCCTATCCGACATGTCAGGAAGAAGCCCTTTGTACAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
gctgaat
- - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - -tatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacca