1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caacttacaaactttatactgcaaaacgtagcatgttcgttttttttttgctgtactttaaagttgcatattcatcctcgtcacttgtgtcttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAATGGTGTAGTGTACATTAGCAATTTAGCATAGGTCCGGAGCTAGTTCTG
species | Zea mays |
transcript | GRMZM2G052713_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|32943128|gb|CF047947.1|CF047947
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAEST: gi|60394275|gb|DN227145.1|DN227145
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAEST: gi|60352004|gb|DN218977.1|DN218977
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
EST: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGG GCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
genomic: TATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttt ... cttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACA
ttttgctgtactttaaagttgcatattcatcctcgtcacttgtgtcttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAATGGTGTAGTGTACATTAGCAATTTAGCATAGGTCCGGAGCTAGTTCTG
cttgtgtcttttttc CT-rich tract
tactttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacttacaaactttatactgcaaaacgtagcatgttcgttttttttttgctgtactttaaagttgcatattcatcctcgtcacttgtgtcttttttcagGCAATTATAGAGAGGATGGGCGAGCTTGAGAAGCTGGAATGAAAAGAAACAATGGTGTAGTGTACATTAGCAATTTAGCATAGGTCCGGAGCTAGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT