1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atttgtattttaataaaatggtgttttttctttccactgccatctaattcttccattctgtgaaatatatctttcttcctttaccaacaaacttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAAGATATTGTGCACTGCCGTGCGGAAATTAG
species | Zea mays |
transcript | GRMZM2G052546_T04 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA ATATTTTAGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAEST: gi|32909862|gb|CF014674.1|CF014674
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
EST: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGA ATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
genomic: AAGATTGGTGTCAAAACTGTATTCTGCTTGCAGCAAGATTCAGATCTTGAgtatccccac ... acttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAA
aattcttccattctgtgaaatatatctttcttcctttaccaacaaacttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAAGATATTGTGCACTGCCGTGCGGAAATTAG
ttcctttac putative branch site
cttgttc putative PPT
aaatatatctttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtattttaataaaatggtgttttttctttccactgccatctaattcttccattctgtgaaatatatctttcttcctttaccaacaaacttgttcagATATTTTGGAGTCGACATCCGTGCCATTCAAGATTATTCTCTACAATTCAAAGATATTGTGCACTGCCGTGCGGAAATTAG
- -tgtattt
- - - - - -aataaaa
- - - - - - - - - tggtgtt
- - - - - - - - - - - - - - - - - -actgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -cattctg