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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattttttttttgtccctgagcccgttgctgcttctcgattttctgctgaatcatccatactgtggagcgtggactcatgaaatcaccttgctgacgcagATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCACTGGAAAACGCTTTAGGACCTAACGCCGGTTCAGTCAACTTTTCACCAG

Basic information

species Zea mays
transcript GRMZM2G052476_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76292499|gb|DV032067.1|DV032067
EST:     GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAG                         ATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
genomic: GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAGgtaggtgtag ... gctgacgcagATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
EST: gi|148938780|gb|EC883115.2|EC883115
EST:     GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAG                         ATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
genomic: GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAGgtaggtgtag ... gctgacgcagATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
EST: gi|71430898|gb|DR811948.1|DR811948
EST:     GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAG                         ATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
genomic: GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAGgtaggtgtag ... gctgacgcagATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
EST: gi|71447120|gb|DR828170.1|DR828170
EST:     GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAG                         ATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA
genomic: GCAAGGAAGCTCAACCTGGAAGGGGAGCACAAAGCACCTTGAGAAAGGAGgtaggtgtag ... gctgacgcagATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgaatcatccatactgtggagcgtggactcatgaaatcaccttgctgacgcagATCCTTGAGCTTGAGAAGCACTTCAGGGAACAACAGGTTGTGAGTGGTGCACTGGAAAACGCTTTAGGACCTAACGCCGGTTCAGTCAACTTTTCACCAG
                                            tgctgac  putative branch site (score: 2)
                                         ccttgct  CT-rich tract
                                atgaaat  TA-rich tract