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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaagacctaccaacccactagaagcattgcaaaaggctgcagtggagaaacctgcaattgacatgcaacacaaataactccctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT

Basic information

species Zea mays
transcript GRMZM2G052365_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g56320.1 (Oryza sativa), 3'ss of exon 5
------------------------------ataaagacctaccaacccactagaa--gcattgcaaaaggctgcagtggagaaacctgcaat-tgacatgcaacacaaataactccctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT
                               |   ||  || || |  | ||  |   ||||  | || ||| || || | |      || | ||||||   |   |    |   | | |||   |||  ||||||||||||||||||||||| || |||||||| |||||||| || ||| | |||||||||||||| || || ||||| |||||||| |||||||| ||  
gtaatggtttacctgcaagctaactatcttcttttgatttagca-caaattaataccacattttagaatgctacaatgcatatgggcacattgtgacattttattgatgacaagtcattcatcatatt-gcagGCAGCTGAAGATAATGTTGATATAATCAGCTTATCCATTACCCCAAATAGAAGGCCTCCTGGACTAGCCACCTTCTTTAATCCAATTGACATGGCTCTTC

upper sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G13590.1 (Glycine max), 3'ss of exon 5
-----ataaagacctaccaacccactagaagcattgcaaaaggctgcagtggagaaacctgcaattgacatgcaacacaaataactccctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT
      |     | |  |  ||    | || |     |  |   || | |  | ||   | || ||    |    |    |||      |  ||||  ||||||||||||| | ||||  |||||||| ||  ||||||| || ||||||||| || | ||| ||||  | ||||| ||||||||||||||||| |||||| |  
atactttccttgcatgtcttcctttcaaaatctgcttactaaattgta-tccacaattttacatttacggtatggctt--atagtataatcaattg--tttacagGCAGCTCAGGATAGGGTTGACATAATATGCTTGTCAATCACTCCTAATAGGCGTCCTTCTGGTATTGCAACTTTCTTCAATCCAATAGATATGGCATTGC

upper sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G21920.1 (Glycine max), 3'ss of exon 5
--------------------------------------ataaagacctaccaacccactagaagcattgcaaaaggctgcagtggagaaacctgcaattgac---atgcaacacaaataactccctacattgcattt-acagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT
                                        ||| |  |  ||   || | ||     |     || ||    |    |||| |||| |  |    |     |    |  |||      ||    |||  ||||||||| | |||   |||||||| || |||||||| |||||||||||| |  | ||||||||  | ||||| |||||||| ||||||||||||||  |  
gtacattttcaatttttggacaagtgatacattgttgtgcaaataatttacatgtcagt-gatatgatatgtcagtctatt-tatctaaacttgcactaaattttacttttcctgtaagactaatagtatgatgttttgcagGCAGCTCAGGATGGGGTTGACATAATAAGCTTGTCAATTACTCCTAATAGACGTCCTCCTGGTGTTGCAACTTTCTTCAACCCAATAGACATGGCTTTGA

upper sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G30460.1 (Glycine max), 3'ss of exon 5
ataaagacctaccaacccactagaagcattgcaaaaggctgc--agtggagaa-acctgcaattg-acat-----gcaacacaaataactccctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT
         |||           ||| | |   |||  |||   | |  |  | | |  |||||  ||||     |||   |  |||      |  ||||  ||||||||||||| | |||   |||||||| ||  ||||||| || ||||||||| || | ||| ||||  ||||||| ||||||||||||||||| |||||| |  
-------gttactgtaaagtgtaaagtactttcaaaatctgtttactaaattatatccccaattttacatctatggcatggcttatagtataatcaattg--tttacagGCAGCTCAGGATGGGGTTGACATAATATGCTTGTCAATCACTCCTAATAGGCGTCCTTCTGGCATCGCAACTTTCTTCAATCCAATAGATATGGCATTGC

upper sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA09G09850.1 (Glycine max), 3'ss of exon 5
ataaagacctaccaacc-cactagaagcattgcaaaaggctgcagtggagaaacctgcaattgacat-gcaacacaaataactcc--ctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT
    |||  |   |     | | |     |      | |         | |||  ||||    |  | ||    |   |||| |        |    ||| ||||||||| | |||   |||||||| || |||||||| |||||||| ||| |  | ||||||||  | ||||| |||||||| ||||||||||||||  |  
----agagttgtaagtgatagtggtgatttccatgcatgtccttcacaataaaattgcatccaattttgctttgcctgtaacactaatagtgtgatgtttgcagGCAGCTCAGGATGGGGTTGACATAATAAGCTTGTCTATTACTCCCAATAGACGTCCTCCTGGTGTTGCAACCTTCTTCAACCCAATAGACATGGCTTTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211248350|gb|FL214215.1|FL214215
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356757|gb|FL214243.1|FL214243
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356749|gb|FL214235.1|FL214235
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356748|gb|FL214234.1|FL214234
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211248348|gb|FL214213.1|FL214213
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211248346|gb|FL214211.1|FL214211
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCATGCTTGNCCATTACTCCTAATCG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCA-GCTTGTCCATTACTCCTAATCG
EST: gi|211248349|gb|FL214214.1|FL214214
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356753|gb|FL214239.1|FL214239
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356755|gb|FL214241.1|FL214241
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250570|gb|FL214222.1|FL214222
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356747|gb|FL214233.1|FL214233
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250572|gb|FL214224.1|FL214224
EST:     TTTGCTGCTGATGTTGTGGCTGCAATANATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: TTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250573|gb|FL214225.1|FL214225
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250580|gb|FL214232.1|FL214232
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356761|gb|FL214247.1|FL214247
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250567|gb|FL214219.1|FL214219
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250579|gb|FL214231.1|FL214231
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356758|gb|FL214244.1|FL214244
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250569|gb|FL214221.1|FL214221
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250568|gb|FL214220.1|FL214220
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356751|gb|FL214237.1|FL214237
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250574|gb|FL214226.1|FL214226
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356754|gb|FL214240.1|FL214240
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250575|gb|FL214227.1|FL214227
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250566|gb|FL214218.1|FL214218
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211250578|gb|FL214230.1|FL214230
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
EST: gi|211356756|gb|FL214242.1|FL214242
EST:     AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAG                         GCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG
genomic: AAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 97

CATTGCTGTCTATAAAGCTCTTTACAAAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT


Block sizes: 42 (upstream exon), 39 (downstream exon)
Score: 5

CATTGCTGTCTATAAAGCTCTTTACAAAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 8

CATTGCTGTCTATAAAGCTCTTTACAAAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT


Block sizes: 45 (upstream exon), 31 (downstream exon)
Score: 4

CATTGCTGTCTATAAAGCTCTTTACAAAAGCTTTGGTGGTTTTGCTGCTGATGTTGTGGCTGCAATAGATCAGgtattgtttt ... gcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagaaacctgcaattgacatgcaacacaaataactccctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT
                            aaataac  putative branch site (score: 4)
                          acaaataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataaagacctaccaacccactagaagcattgcaaaaggctgcagtggagaaacctgcaattgacatgcaacacaaataactccctacattgcatttacagGCAGCTGAAGATAATGTTGACATTATCAGCTTGTCCATTACTCCTAATCGGAGGCCTCCTGGACTCGCAACATTCTTCAATCCAATAGACATGGCACTCT

- - - -cctacca
- - - - - - - -cccacta
- - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - -gctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaaa