1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatatgctcacaactcttaccaagttatatcagattatagattgtaatcttccactgaaaagatagctgcgcgagacatgaatgtctttctctgctgtctcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTCCCTGGAGGGGACCTGGCCAAGGTGCAACGAGCAGTCTGCATGATCAGC
species | Zea mays |
transcript | GRMZM2G051782_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|88750800|gb|DY534941.1|DY534941
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|16380124|gb|BI993333.1|BI993333
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: AGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|6760492|gb|AW324651.1|AW324651
genomic: AGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCGGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|33104189|gb|CF064149.1|CF064149
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAATTACCAACCACCAACTGTAGTEST: gi|32845637|gb|CD985318.1|CD985318
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|33103375|gb|CF063335.1|CF063335
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAATTACCAACCACCAACTGTGGTEST: gi|32843933|gb|CD983614.1|CD983614
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|13558368|gb|BG549724.1|BG549724
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAGCTACCAACCACCAACTGTAGTEST: gi|211453319|gb|FL456387.1|FL456387
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|32844121|gb|CD983802.1|CD983802
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|32845237|gb|CD984918.1|CD984918
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|116814638|gb|EC857236.1|EC857236
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGAACAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|32844213|gb|CD983894.1|CD983894
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|32845568|gb|CD985249.1|CD985249
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTEST: gi|32844979|gb|CD984660.1|CD984660
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
EST: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTG GTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
genomic: GCTGCTGTCCATTCAATCAAGACCAAGAGAGCAGTGCAGTTTGTTGATTGgtatatgctc ... tcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGT
ctgaaaagatagctgcgcgagacatgaatgtctttctctgctgtctcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTCCCTGGAGGGGACCTGGCCAAGGTGCAACGAGCAGTCTGCATGATCAGC
tctttctctgctgtct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgctcacaactcttaccaagttatatcagattatagattgtaatcttccactgaaaagatagctgcgcgagacatgaatgtctttctctgctgtctcatgcacagGTGCCCTACTGGTTTCAAGTGTGGGATAAACTACCAACCACCAACTGTAGTCCCTGGAGGGGACCTGGCCAAGGTGCAACGAGCAGTCTGCATGATCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG