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gttagtgtttgatcatatagttcttgatccatatgatgtttccatagcagagctccaaacaatcagaatattacactacatatagaaacagtttctctatgcgattttatgttttaccccttccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG
species | Zea mays |
transcript | GRMZM2G051276_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTG GTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCAEST: gi|19351081|gb|BM895613.1|BM895613
genomic: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTGgttagtgttt ... ccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCA
EST: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTG GTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCAEST: gi|19350801|gb|BM895333.1|BM895333
genomic: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTGgttagtgttt ... ccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCA
EST: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTG GTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCAEST: gi|89106256|gb|DY576473.1|DY576473
genomic: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTGgttagtgttt ... ccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCA
EST: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTG GTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCAEST: gi|22491474|gb|BU051397.1|BU051397
genomic: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTGgttagtgttt ... ccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCA
EST: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTG GTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCAEST: gi|101394982|gb|EB819425.1|EB819425
genomic: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTGgttagtgttt ... ccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCA
EST: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTG GTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACCATTTCTGCA
genomic: CTGTGTCCATTAGTGTTCTCTTCCGTGGAAAGCCTGCTGCTTCTACTGTGgttagtgttt ... ccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCA
acatatagaaacagtttctctatgcgattttatgttttaccccttccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG
ttttatgttttacccc CT-rich tract
attttatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtttgatcatatagttcttgatccatatgatgtttccatagcagagctccaaacaatcagaatattacactacatatagaaacagtttctctatgcgattttatgttttaccccttccttatttagGTGGAATTTTGTGGCGGGCCTATGTGCTGGAGCACCCGTACAATTTCTGCATCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA