1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccccttctgtctcggattaaaaattaaccgaacaagctctctgtgtttcctcctcgatcaatcatggattggtttttaagttcatccttatgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGAGAGTGCGAATTCAGGGAGAAGCGGTCAGTGTGATGACTGGCACCCTCT
species | Zea mays |
transcript | GRMZM2G050325_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|18171147|gb|BM340987.1|BM340987
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|33097551|gb|CF057511.1|CF057511
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: AAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|166674323|gb|EG063021.1|EG063021
genomic: AAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAAEST: gi|50338931|gb|CO534057.1|CO534057
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAA
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|116816281|gb|EC859000.1|EC859000
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: ACCTTACCTGGGGTGGGAAGC-GGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|71775486|gb|DR973364.1|DR973364
genomic: ACCTTA-CTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGGAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGEST: gi|60356851|gb|DN223824.1|DN223824
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|50331530|gb|CO526656.1|CO526656
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|148986829|gb|EE030628.2|EE030628
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAATGGATTACTAEST: gi|37375249|gb|CF624050.1|CF624050
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTA
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|37384216|gb|CF629166.1|CF629166
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|211213647|gb|FL457806.1|FL457806
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|37376720|gb|CF624915.1|CF624915
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|33104525|gb|CF064485.1|CF064485
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|9254288|gb|BE344756.1|BE344756
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACATGCAGGEST: gi|93015163|gb|EB640683.1|EB640683
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGGAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTEST: gi|33099705|gb|CF059665.1|CF059665
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCT
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|44901068|gb|CK827613.1|CK827613
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|78119655|gb|DV538039.1|DV538039
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGEST: gi|113701518|gb|EE679022.1|EE679022
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
EST: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA GCATCCCCTCGGAGTGGAATATTATACCTGGAGTTAGAAGCTACAGGCAGG
genomic: CACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAAgtacgtttct ... atgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGG
gtttcctcctcgatcaatcatggattggtttttaagttcatccttatgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGAGAGTGCGAATTCAGGGAGAAGCGGTCAGTGTGATGACTGGCACCCTCT
tccttat CT-rich tract
tttttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccccttctgtctcggattaaaaattaaccgaacaagctctctgtgtttcctcctcgatcaatcatggattggtttttaagttcatccttatgtcaccagGCATCCCCTCGGAGTGGAATACTATACCTGGAGTTAGAAGCTACAGGCAGGAGAGTGCGAATTCAGGGAGAAGCGGTCAGTGTGATGACTGGCACCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC