1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcatttggtattgatcgacacaattttgctcattttattgatcatttaatcatggaactcattccacactgcatccttttcattgtattgtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGCTGAGTTCCTCTCAAAGCCCCCTGCAAAAGATCTTGAG
species | Zea mays |
transcript | GRMZM2G049672_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCTATGTTCACAGCTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGCEST: gi|67021056|gb|CO449805.1|CO449805
genomic: GACCTATGTTCACAGCTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtatgtctgt ... gtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
EST: GACCTATGTTCACAGCTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGTTCCTGCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|33094944|gb|CF054938.1|CF054938
genomic: GACCTATGTTCACAGCTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtatgtctgt ... gtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
EST: GACCTATGTTCACAGCTTGGAGCTGTGTTAGGAATGCCTGGGGACTGCTG TCGGACCTTGGGAGGTGTTCCTGCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|32909333|gb|CF014145.1|CF014145
genomic: GACCTATGTTCACAGCTTGGAGCTGTGTTAGGAATGCTTGGGGACTGCTGgtatgtctgt ... gtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
EST: TGCTTGGGGACTGCTG TCGGACCTTGGGAGATGTTCCTGCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|32909332|gb|CF014144.1|CF014144
genomic: TGCTTGGGGACTGCTGgtatgtctgt ... gtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
EST: GCTTGGGGACTGCTG TCGGACCTTGGGAGATGTTCCTGCAGCAATCACTTACTATGAAGAAAGTGCEST: gi|16925308|gb|BM078376.1|BM078376
genomic: GCTTGGGGACTGCTGgtatgtctgt ... gtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
EST: TGTTAGGAATGCTTGGGGACTGCTG TCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
genomic: TGTTAGGAATGCTTGGGGACTGCTGgtatgtctgt ... gtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGC
tttaatcatggaactcattccacactgcatccttttcattgtattgtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGCTGAGTTCCTCTCAAAGCCCCCTGCAAAAGATCTTGAG
atttaat putative branch site (score: 241)
tgttttc putative PPT
ttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttggtattgatcgacacaattttgctcattttattgatcatttaatcatggaactcattccacactgcatccttttcattgtattgtgttttcagTCGGACCTTGGGAGATGTTCCTGCAGCAATCACCTACTATGAAGAAAGTGCTGAGTTCCTCTCAAAGCCCCCTGCAAAAGATCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ttcattt
- - - - - - - - cgacaca
- - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgca