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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgttcaataataagcaccactatatatctaatcgcagttatttaattcagtcattcttatacctttccagGGATATCAAGCCTGATAATTTGTTGCTAGATCGAAGTGGCCACTTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTAGATAGCAGTTGCTTCCCAAAT

Basic information

species Zea mays
transcript GRMZM2G049088_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049088_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 3'ss of exon 4
gtaacgt-tcaataataagcaccactatatatctaatcgcagttatttaattcagtcattcttatacctttccagGGATATCAAGCCTGATAATTTGTTGCTAGATCGAAGTGGCCACTTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTAGATAGCAGTTGCTTCCCAAAT
||||    |  |||||||  |   |     ||    | |||  | |   | ||  || ||  ||||| ||| |||||||||||||||||| |||||| || |||| |||| ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||
gtaattcattgataataaaaattgcatggcattcggtagcaaatttgccactccatctttgctatacattttcagGGATATCAAGCCTGACAATTTGCTGTTAGACCGAACTGGGCACCTGAAGCTTTCAGATTTTGGCTTATGCAAACCTCTAGATAGTAGTAGCTTTCCAAAT

upper sequence: GRMZM2G049088_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------gtaacgttcaataataagcaccactatatatctaatcgcagttatttaattcagtcattcttatacctttccagGGATATCAAGCCTGATAATTTGTTGCTAGATCGAAGTGGCCACTTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTAGATAGCAGTTGCTTCCCAAAT
                            |||    ||  ||  | |||     ||| || ||     |  |  ||  |  |   |||  | | ||||  |||||||||||||||||| ||||| ||||| |||||   ||||||  |||| |||||||||||||| || || |||||  | ||  | ||| | || || |||
tttattttattttacttatttttaacttgtatacatctttagcatgcat--gcatacatataccttaaagtccttggtaaatgaatttgttttccttcacagGGATATCAAGCCTGACAATTTATTGCTTGATCGTTATGGCCATATGAAACTTTCAGATTTTGGGTTGTGCAAACCCTTGGACTGTAGTAGTTTTCCCAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accactatatatctaatcgcagttatttaattcagtcattcttatacctttccagGGATATCAAGCCTGATAATTTGTTGCTAGATCGAAGTGGCCACTTGAAGCTTTCAGATTTTGGCTTATGTAAACCTCTAGATAGCAGTTGCTTCCCAAAT
                                      ttcttatacctttcc  CT-rich tract
                    agttatttaattca  TA-rich tract