1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcttttcatttctaaattcacatccttagcttgtttttcctatgctatgaatgtatgcaacttttcttaattgcgccttacaactgattttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAAGTATATTGTGAAGTGACCACCGACAAGACAATGCAG
species | Zea mays |
transcript | GRMZM2G048819_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAG GCATGTGAAATTCTATTGAAACCACAAAAATCACTGEST: gi|211165060|gb|FL318150.1|FL318150
genomic: TTCAAAGGGATTTTCATATTTATGTTGTGAATATGTTTGATACTGCTAAGgtaagtactg ... ttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTG
EST: AATATGTTTGATACTGCTAAG GCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAA
genomic: AATATGTTTGATACTGCTAAGgtaagtactg ... ttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAA
ctatgaatgtatgcaacttttcttaattgcgccttacaactgattttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAAGTATATTGTGAAGTGACCACCGACAAGACAATGCAG
aactgat putative branch site (score: 3)
ctgattttttttcc CT-rich tract
aacttttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttttcatttctaaattcacatccttagcttgtttttcctatgctatgaatgtatgcaacttttcttaattgcgccttacaactgattttttttccagGCATGTGAAATTCTATTGAAACCACAAAAATCACTGGCATATTTGCTTGAAGTATATTGTGAAGTGACCACCGACAAGACAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG