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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttaactgcactgagttattctattcatttggtttagggaggcaaaggccctgttacttcttcacacgtgttaagtgtctgttctccacaaaatttgcagGCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTTGCTGATCCATTGTTGCATGGCGGCTACCCGAAAAGGGGTTTGTACCAGGCCTTAGCTG

Basic information

species Zea mays
transcript GRMZM2G048210_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048210_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g47270.1 (Oryza sativa), 3'ss of exon 4
------------------------------gtaggtttaactgcactgagttat-tctattcatttggtttagggaggcaaaggccctgttacttcttca-cacg-tgttaagtgtctgttctccacaaaatttgcagGCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTTGCTGATCCATTGTTGCATGGCGGCTACCCGAAAAGGGGTTTGTACCAGGCCTTAGCTG
                              || || | ||||| ||| | |||| ||  ||| ||||| |   |  ||   | |  ||||| |   |||| || | ||| ||||||||  | |||  | |||||||||||||||||||| || |||||||||||||||||||||||  | || ||||||| | |||| ||  | || || |||||||||||||||||||| |||||||
gtaggttcatccttttatttttaagaatgtgtgggctcaactgtactaaattatctcccttcctttgggtgtagaggg--gatgttctgtttcaatttcatcatgatgtgaagtgtct--tatccttataatttgcagGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94473087|gb|EB702045.1|EB702045
EST:     AAGCAATCGATCACACCCAGCCTTCAGGGGAGCAAAACCTTGTCGCATGG                         GCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTTGCTGATCCA
genomic: AAGCAATCGATCACACCCAGCCTTCAGGGGAGCAAAACCTTGTCGCATGGgtaggtttaa ... aaatttgcagGCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTTGCTGATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggccctgttacttcttcacacgtgttaagtgtctgttctccacaaaatttgcagGCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTTGCTGATCCATTGTTGCATGGCGGCTACCCGAAAAGGGGTTTGTACCAGGCCTTAGCTG
                                          acaaaattt  TA-rich tract